Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 1.1e-124 449.9 206 100.0
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 6.8e-124 447.2 205 99.5
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.1e-119 431.0 205 95.6
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.5e-118 428.7 205 95.1
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.3e-116 422.2 205 94.6
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 6.8e-116 420.6 205 94.6
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.5e-115 419.5 205 94.1
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.9e-113 412.5 195 96.4
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 4.2e-105 384.8 210 83.3
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.1e-102 376.7 198 85.9
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 1.4e-100 369.8 197 85.3
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.3e-98 363.2 212 76.9
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.7e-98 362.8 212 77.4
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.7e-98 362.8 212 77.4
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 2.2e-98 362.5 204 80.4
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.9e-98 362.1 200 81.5
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 2.9e-98 362.1 205 79.0
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.8e-98 361.7 212 76.4
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 8.4e-98 360.5 209 78.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 8.4e-98 360.5 204 78.9
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 1.1e-97 360.1 204 79.9
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.1e-97 360.1 204 79.4
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.4e-97 359.8 212 76.9
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.9e-97 359.4 201 79.6
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.4e-97 359.0 200 81.0
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 3.2e-97 358.6 206 77.7
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 4.2e-97 358.2 204 78.9
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 4.2e-97 358.2 202 79.2
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.2e-97 358.2 206 77.2
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 7.1e-97 357.5 204 77.9
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 9.3e-97 357.1 212 75.9
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 9.3e-97 357.1 213 77.0
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.2e-96 356.7 200 80.5
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.6e-96 356.3 207 77.8
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 2.1e-96 355.9 204 78.4
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 2.7e-96 355.5 211 77.3
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.3e-95 353.2 215 75.3
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 6.7e-95 350.9 205 76.1
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 8.7e-95 350.5 204 78.4
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.1e-94 350.1 192 79.7
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.5e-94 349.7 212 73.6
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.5e-94 349.7 200 78.5
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 1.9e-94 349.4 216 74.1
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 3.3e-94 348.6 209 74.6
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 4.3e-94 348.2 204 74.5
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 9.6e-94 347.1 202 76.7
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 9.6e-94 347.1 208 76.0
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 1.3e-93 346.7 202 77.2
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.3e-93 346.7 201 78.6
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.3e-93 346.7 206 75.7
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 2.1e-93 345.9 210 74.8
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 3.7e-93 345.1 209 74.2
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 4.8e-93 344.7 229 71.2
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 6.2e-93 344.4 210 75.2
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.1e-92 343.6 207 72.9
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 1.4e-92 343.2 202 75.2
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 5.3e-92 341.3 206 74.3
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 9.0e-92 340.5 197 75.1
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.5e-91 339.7 208 73.6
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 7.6e-91 337.4 204 73.5
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.7e-90 336.3 201 74.6
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.2e-90 335.9 202 73.3
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.2e-90 335.9 202 73.3
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 2.9e-90 335.5 210 72.4
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.9e-90 334.7 202 73.3
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 4.9e-90 334.7 222 71.2
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 1.4e-89 333.2 202 72.8
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.4e-89 333.2 212 70.3
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 5.5e-89 331.3 209 69.9
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.8e-87 326.2 206 73.8
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 1.8e-87 326.2 200 76.0
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.8e-87 326.2 181 80.7
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.5e-86 323.2 185 79.5
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 5.6e-86 321.2 217 67.3
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 5.6e-86 321.2 181 78.5
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 7.4e-86 320.9 181 79.0
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 7.4e-86 320.9 181 79.0
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.6e-85 319.7 206 70.9
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 4.8e-85 318.2 237 62.9
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 6.2e-85 317.8 211 68.7
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 6.2e-85 317.8 178 80.3
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 2.4e-84 315.8 202 70.3
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 4.0e-84 315.1 184 76.6
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.2e-83 313.5 184 76.6
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 4.5e-83 311.6 211 68.2
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.3e-82 310.1 210 67.1
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.3e-82 310.1 209 67.9
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.3e-82 310.1 200 70.5
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.7e-82 309.7 204 68.1
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 2.2e-82 309.3 211 66.8
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 3.8e-82 308.5 205 70.7
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 3.8e-82 308.5 207 68.6
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.5e-82 307.8 210 66.7
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.1e-81 307.0 207 69.1
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 2.5e-81 305.8 218 66.5
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.5e-81 305.8 163 81.6
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 5.5e-81 304.7 216 65.3
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.8e-79 299.7 204 66.7
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 2.3e-79 299.3 201 67.7
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 4.3e-78 295.0 205 64.9
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 5.7e-78 294.7 203 64.0
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 2.1e-77 292.7 209 65.1
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 3.7e-77 292.0 207 64.7
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 3.7e-77 292.0 207 64.7
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 3.7e-77 292.0 207 64.7
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.4e-76 290.0 208 63.9
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.8e-76 289.7 202 63.9
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 5.9e-75 284.6 227 57.7
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 5.0e-74 281.6 208 57.7
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 5.0e-74 281.6 185 68.1
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.4e-73 280.0 179 71.5
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 2.5e-73 279.3 180 72.8
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 5.5e-73 278.1 185 63.2
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 2.7e-72 275.8 183 62.8
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 3.9e-71 271.9 172 73.8
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 9.7e-70 267.3 201 62.2
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.6e-69 266.5 166 71.7
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 6.9e-68 261.2 175 70.3
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.5e-67 260.0 231 57.1
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.7e-66 256.5 154 73.4
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 6.1e-64 248.1 155 69.0
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 6.1e-64 248.1 155 69.0
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.1e-60 235.7 229 55.9
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 6.9e-60 234.6 170 57.1
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 2.3e-55 219.5 117 82.1
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.6e-48 196.8 224 47.8
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.6e-48 196.8 174 49.4
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 2.7e-48 196.1 187 47.1
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 8.2e-45 184.5 135 62.2
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.3e-34 150.6 68 91.2
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 5.5e-33 145.2 68 92.6
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.8e-31 140.2 85 75.3
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 6.3e-29 131.7 179 43.0
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 6.1e-24 115.2 115 51.3
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 7.5e-22 108.2 64 75.0
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.6e-19 100.5 45 95.6
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.7e-19 99.8 66 69.7
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.1e-17 94.4 45 82.2
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.4e-15 87.4 66 62.1
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 9.8e-14 81.3 36 88.9
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 2.4e-12 76.6 31 96.8


User provided reference genes

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