Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0245361 Rosa chinensis HOM05D004890 ORTHO05D005869 1.8e-96 355.9 176 100.0
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 1.2e-76 290.0 165 90.9
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 4.5e-76 288.1 166 89.8
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 6.5e-75 284.3 166 88.6
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 2.2e-70 269.2 175 81.1
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 4.1e-69 265.0 175 80.0
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 2.3e-67 259.2 175 78.9
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 2.3e-67 259.2 175 78.9
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 6.1e-57 224.6 173 70.5
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 1.1e-53 213.8 168 69.0
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 2.3e-43 179.5 172 56.4
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 1.5e-42 176.8 168 56.5
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 6.2e-41 171.4 172 54.1
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 4.0e-40 168.7 179 54.2
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 4.9e-38 161.8 162 53.1
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 1.9e-37 159.8 172 50.6
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 4.1e-37 158.7 173 46.8
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 4.1e-37 158.7 167 49.1
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 1.6e-36 156.8 172 51.7
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 2.1e-36 156.4 172 52.3
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 2.1e-36 156.4 169 50.9
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 2.7e-36 156.0 172 49.4
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 8.6e-35 151.0 169 49.7
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 1.1e-34 150.6 179 44.1
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 1.5e-34 150.2 180 43.9
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 1.6e-33 146.7 173 50.3
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 1.6e-33 146.7 179 43.0
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 6.2e-33 144.8 170 45.9
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 6.2e-33 144.8 170 45.3
Dinv04971 Davidia involucrata HOM05D004890 ORTHO05D005869 8.1e-33 144.4 172 48.8
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 8.1e-33 144.4 162 48.8
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 1.1e-32 144.1 162 48.1
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 2.4e-32 142.9 162 48.1
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 4.0e-32 142.1 161 49.1
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 5.2e-32 141.7 173 46.8
RcHm_v2.0_Chr6g0244931 Rosa chinensis HOM05D004890 ORTHO05D005869 8.9e-32 141.0 96 77.1
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 1.5e-31 140.2 176 42.6
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 4.4e-31 138.7 173 44.5
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 4.4e-31 138.7 176 42.0
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 9.9e-31 137.5 160 47.5
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 1.7e-30 136.7 174 44.3
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 1.7e-30 136.7 173 45.1
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 1.1e-29 134.0 172 44.2
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 1.4e-29 133.7 171 45.6
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 1.4e-29 133.7 171 45.6
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 1.9e-29 133.3 176 42.6
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 4.1e-29 132.1 176 43.8
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 1.6e-28 130.2 157 45.2
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 2.1e-28 129.8 167 43.7
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 4.6e-28 128.6 183 39.3
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 1.0e-27 127.5 174 42.0
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 1.0e-27 127.5 170 42.9
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 1.3e-27 127.1 163 44.2
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 3.0e-27 125.9 164 43.9
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 5.1e-27 125.2 139 48.2
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 5.1e-27 125.2 164 43.3
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 8.7e-27 124.4 163 42.9
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 1.5e-26 123.6 160 43.1
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 2.5e-26 122.9 173 40.5
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 3.3e-26 122.5 164 40.2
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 5.6e-26 121.7 176 38.6
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 5.6e-26 121.7 154 45.5
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 4.7e-25 118.6 150 45.3
Ah.01g022440 Amaranthus hybridus HOM05D004890 ORTHO05D005869 6.2e-25 118.2 186 38.2
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 6.2e-25 118.2 157 47.1
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 6.2e-25 118.2 165 43.0
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 8.1e-25 117.9 165 42.4
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 1.1e-24 117.5 157 42.7
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 1.1e-24 117.5 128 49.2
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 2.4e-24 116.3 178 42.7
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 2.4e-24 116.3 159 41.5
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 9.0e-24 114.4 172 39.5
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 1.5e-23 113.6 158 41.1
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 2.0e-23 113.2 166 42.2
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 6.4e-22 108.2 168 37.5
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 8.4e-22 107.8 149 40.9
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 1.1e-21 107.5 152 42.1
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 2.4e-21 106.3 168 38.7
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 3.2e-21 105.9 168 38.1
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 1.6e-20 103.6 155 38.7
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 2.7e-20 102.8 156 41.0
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 1.3e-19 100.5 159 37.1
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 2.3e-19 99.8 144 38.9
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 2.3e-19 99.8 144 38.9
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 1.1e-18 97.4 162 38.3
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 1.9e-18 96.7 116 45.7
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 7.3e-18 94.7 149 36.2
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 7.3e-18 94.7 149 36.2
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 5.1e-11 72.0 44 84.1
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 1.5e-10 70.5 176 30.7
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 2.5e-10 69.7 95 38.9
HPP92_020638 Vanilla planifolia HOM05D004890 ORTHO05D005869 2.5e-10 69.7 146 36.3
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 7.4e-10 68.2 162 32.7
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 4.0e-08 62.4 154 27.9


User provided reference genes

Program Settings