Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0245351 Rosa chinensis HOM05D004890 ORTHO05D005869 9.0e-128 460.3 238 100.0
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 4.8e-97 358.2 216 87.0
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 2.2e-94 349.4 216 85.2
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 2.7e-92 342.4 210 85.7
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.0e-91 340.5 216 82.9
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 6.7e-91 337.8 216 81.9
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.5e-90 336.7 216 81.9
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 2.6e-90 335.9 216 81.5
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 7.4e-90 334.3 216 81.5
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 1.3e-70 270.4 222 65.8
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 3.3e-61 239.2 225 58.2
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 6.8e-59 231.5 225 57.8
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 5.4e-56 221.9 222 52.3
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 3.6e-52 209.1 223 50.7
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 5.2e-51 205.3 219 51.1
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 2.6e-50 203.0 224 54.5
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 2.6e-50 203.0 241 47.7
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 1.7e-49 200.3 241 47.3
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 2.2e-49 199.9 202 52.0
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 1.1e-48 197.6 219 49.3
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 2.4e-48 196.4 242 46.7
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 2.7e-47 193.0 222 48.2
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 2.7e-47 193.0 223 47.1
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 1.7e-46 190.3 172 55.2
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 3.9e-46 189.1 223 49.8
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 3.3e-45 186.0 224 47.3
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 7.3e-45 184.9 222 46.4
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 1.6e-44 183.7 222 46.8
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 2.3e-43 179.9 203 47.8
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 1.7e-41 173.7 189 48.7
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 4.9e-41 172.2 213 45.5
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 4.9e-41 172.2 242 44.2
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 8.3e-41 171.4 214 44.9
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 1.9e-40 170.2 221 44.3
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 2.4e-40 169.9 215 43.7
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 4.1e-40 169.1 182 51.6
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 5.4e-40 168.7 190 46.8
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 1.2e-39 167.5 222 45.9
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 2.1e-39 166.8 194 47.4
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 3.5e-39 166.0 182 50.5
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 6.0e-39 165.2 213 44.1
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 7.8e-39 164.9 195 45.1
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 7.8e-39 164.9 190 45.8
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 1.0e-38 164.5 188 46.8
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 3.9e-38 162.5 195 46.2
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 8.6e-38 161.4 213 42.3
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 8.6e-38 161.4 217 41.5
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 8.6e-38 161.4 213 42.3
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 1.5e-37 160.6 219 41.6
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 1.5e-37 160.6 217 41.0
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 1.9e-37 160.2 217 41.9
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 1.9e-37 160.2 177 48.6
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 3.3e-37 159.5 219 41.1
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 3.3e-37 159.5 209 44.5
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 3.3e-37 159.5 226 42.9
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 5.6e-37 158.7 123 65.9
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 7.3e-37 158.3 221 42.5
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 9.5e-37 157.9 194 44.8
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 2.8e-36 156.4 219 41.1
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 3.6e-36 156.0 226 40.7
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 4.7e-36 155.6 209 41.6
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 1.8e-35 153.7 194 43.8
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 8.9e-35 151.4 182 46.7
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 2.0e-34 150.2 215 41.9
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 9.9e-34 147.9 221 37.6
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 6.4e-33 145.2 226 39.4
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 8.4e-33 144.8 213 41.3
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 2.7e-31 139.8 222 41.0
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 3.5e-31 139.4 217 41.5
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 3.3e-29 132.9 206 39.8
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 4.3e-29 132.5 213 36.2
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 5.6e-29 132.1 213 39.0
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 2.8e-28 129.8 213 37.6
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 4.7e-28 129.0 174 39.1
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 4.7e-28 129.0 216 39.8
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 1.8e-27 127.1 184 39.7
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 2.4e-27 126.7 198 40.4
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 5.3e-27 125.6 184 40.8
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 9.0e-27 124.8 219 37.4
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 1.2e-26 124.4 182 40.1
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 1.2e-26 124.4 184 37.5
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 2.0e-26 123.6 185 36.8
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 2.2e-25 120.2 194 38.1
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 2.2e-25 120.2 187 38.5
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 4.9e-25 119.0 178 38.8
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 1.4e-24 117.5 223 32.7
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 1.4e-24 117.5 171 39.8
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 5.4e-24 115.5 184 38.0
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 1.6e-23 114.0 171 40.4
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 2.7e-23 113.2 184 37.5
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 6.0e-23 112.1 183 36.1
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 1.0e-22 111.3 206 34.0
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 5.1e-22 109.0 184 37.5
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 5.3e-19 99.0 184 33.7
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 6.4e-17 92.0 137 38.7
SEGI_38665 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 2.7e-15 86.7 235 29.8
AagrBONN_evm.TU.Sc2ySwM_362.822 Anthoceros agrestis HOM05D004890 ORTHO05D005869 1.1e-11 74.7 140 34.3
RcHm_v2.0_Chr6g0244921 Rosa chinensis HOM05D004890 ORTHO05D005869 2.9e-09 66.6 38 81.6


User provided reference genes

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