Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0245041 Rosa chinensis HOM05D003456 ORTHO05D004082 2.0e-39 165.2 80 100.0
FvH4_2g10490 Fragaria vesca HOM05D003456 ORTHO05D004082 3.9e-27 124.4 92 71.7
FvH4_6g18590 Fragaria vesca HOM05D003456 ORTHO05D004082 3.9e-27 124.4 92 72.8
FAN05G2371 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.9e-27 124.4 92 72.8
FAN05G5536 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.9e-27 124.4 92 72.8
FAN14G1410 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.9e-27 124.4 92 72.8
FAN24G1424 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.9e-27 124.4 92 71.7
RcHm_v2.0_Chr3g0473171 Rosa chinensis HOM05D003456 ORTHO05D004082 3.9e-27 124.4 92 72.8
FAN09G3852 Fragaria x ananassa HOM05D003456 ORTHO05D004082 5.1e-27 124.0 92 71.7
RcHm_v2.0_Chr6g0270521 Rosa chinensis HOM05D003456 ORTHO05D004082 6.7e-27 123.6 92 69.6
Nitab4.5_0011538g0030 Nicotiana tabacum HOM05D003456 ORTHO05D004082 2.0e-26 122.1 92 70.7
Cc02_g09640 Coffea canephora HOM05D003456 ORTHO05D004082 3.3e-26 121.3 92 70.7
Solyc11g006920.2 Solanum lycopersicum HOM05D003456 ORTHO05D004082 4.3e-26 120.9 92 67.4
Sopen11g002830 Solanum pennellii HOM05D003456 ORTHO05D004082 4.3e-26 120.9 92 67.4
PGSC0003DMG400023972 Solanum tuberosum HOM05D003456 ORTHO05D004082 4.3e-26 120.9 92 67.4
arahy.Tifrunner.gnm1.ann1.C03M9B Arachis hypogaea HOM05D003456 ORTHO05D004082 5.7e-26 120.6 92 68.5
arahy.Tifrunner.gnm1.ann1.KEI5RC Arachis hypogaea HOM05D003456 ORTHO05D004082 5.7e-26 120.6 92 68.5
arahy.Tifrunner.gnm1.ann1.P2449T Arachis hypogaea HOM05D003456 ORTHO05D004082 5.7e-26 120.6 92 68.5
arahy.Tifrunner.gnm1.ann1.VF2KJZ Arachis hypogaea HOM05D003456 ORTHO05D004082 5.7e-26 120.6 92 68.5
Prupe.7G111000 Prunus persica HOM05D003456 ORTHO05D004082 5.7e-26 120.6 92 69.6
unitig_0.g1020 Utricularia gibba HOM05D003456 ORTHO05D004082 7.4e-26 120.2 92 69.6
Actinidia34723 Actinidia chinensis HOM05D003456 ORTHO05D004082 9.7e-26 119.8 92 68.5
CANSAT56G3878 Cannabis sativa HOM05D003456 ORTHO05D004082 9.7e-26 119.8 94 68.1
Phvul.001G189600 Phaseolus vulgaris HOM05D003456 ORTHO05D004082 9.7e-26 119.8 92 68.5
Lj1g0011692 Lotus japonicus HOM05D003456 ORTHO05D004082 1.3e-25 119.4 92 68.5
SGA_v2.0_scaffold85G26612 Striga asiatica HOM05D003456 ORTHO05D004082 1.3e-25 119.4 92 68.5
EL10Ac1g00743 Beta vulgaris HOM05D003456 ORTHO05D004082 1.7e-25 119.0 92 67.4
MD12G1035500 Malus domestica HOM05D003456 ORTHO05D004082 1.7e-25 119.0 92 67.4
SGA_v2.0_scaffold62G21335 Striga asiatica HOM05D003456 ORTHO05D004082 1.7e-25 119.0 92 68.5
Glyma.19G194700 Glycine max HOM05D003456 ORTHO05D004082 2.2e-25 118.6 92 67.4
Lalb_Chr20g0111761 Lupinus albus HOM05D003456 ORTHO05D004082 2.2e-25 118.6 92 65.2
Glyma.03G195000 Glycine max HOM05D003456 ORTHO05D004082 3.7e-25 117.9 92 67.4
MSTRG.27572 Avicennia marina HOM05D003456 ORTHO05D004082 4.8e-25 117.5 92 67.4
CANSAT56G1853 Cannabis sativa HOM05D003456 ORTHO05D004082 4.8e-25 117.5 92 67.4
Hma1.2p1_0232F.1_g097840 Hydrangea macrophylla HOM05D003456 ORTHO05D004082 4.8e-25 117.5 92 67.4
MD14G1022300 Malus domestica HOM05D003456 ORTHO05D004082 4.8e-25 117.5 92 65.2
GSVIVG01033834001 Vitis vinifera HOM05D003456 ORTHO05D004082 4.8e-25 117.5 92 67.4
COL.COLO4_29759 Corchorus olitorius HOM05D003456 ORTHO05D004082 6.3e-25 117.1 92 67.4
Lalb_Chr25g0288351 Lupinus albus HOM05D003456 ORTHO05D004082 1.1e-24 116.3 92 65.2
Manes.09G055901 Manihot esculenta HOM05D003456 ORTHO05D004082 1.1e-24 116.3 92 67.4
ECA233G4183 Erigeron canadensis HOM05D003456 ORTHO05D004082 1.4e-24 115.9 92 66.3
SalBow6G0063 Salvia bowleyana HOM05D003456 ORTHO05D004082 1.4e-24 115.9 92 66.3
AUR62013762 Chenopodium quinoa HOM05D003456 ORTHO05D004082 1.8e-24 115.5 92 65.2
Oeu026593.1 Olea europaea HOM05D003456 ORTHO05D004082 1.8e-24 115.5 92 67.4
Atru.chr8.1550 Acer truncatum HOM05D003456 ORTHO05D004082 2.4e-24 115.2 92 65.2
Gohir.A04G063300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 2.4e-24 115.2 92 66.3
Gohir.D04G100300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 2.4e-24 115.2 92 66.3
Gorai.009G403300 Gossypium raimondii HOM05D003456 ORTHO05D004082 2.4e-24 115.2 92 66.3
HanXRQChr08g0217241 Helianthus annuus HOM05D003456 ORTHO05D004082 2.4e-24 115.2 92 66.3
Psat4g110960 Pisum sativum HOM05D003456 ORTHO05D004082 2.4e-24 115.2 92 66.3
TPR.G9901 Trifolium pratense HOM05D003456 ORTHO05D004082 2.4e-24 115.2 92 66.3
TWI74G0284 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 2.4e-24 115.2 92 64.1
CiPaw.13G039000 Carya illinoinensis HOM05D003456 ORTHO05D004082 3.1e-24 114.8 92 65.2
Haze_19603 Corylus avellana HOM05D003456 ORTHO05D004082 3.1e-24 114.8 92 65.2
Migut.F01607 Erythranthe guttata HOM05D003456 ORTHO05D004082 3.1e-24 114.8 92 65.2
Rhsim03G0097900 Rhododendron simsii HOM05D003456 ORTHO05D004082 3.1e-24 114.8 92 66.3
Ca_08885_v3 Cicer arietinum L. HOM05D003456 ORTHO05D004082 4.1e-24 114.4 92 65.2
Eucgr.J00259 Eucalyptus grandis HOM05D003456 ORTHO05D004082 4.1e-24 114.4 92 66.3
TWI53G1385 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 4.1e-24 114.4 92 64.1
TAR633G0109 Trochodendron aralioides HOM05D003456 ORTHO05D004082 4.1e-24 114.4 92 65.2
TAR636G2922 Trochodendron aralioides HOM05D003456 ORTHO05D004082 4.1e-24 114.4 92 65.2
Cfa016601 Carpinus fangiana HOM05D003456 ORTHO05D004082 5.3e-24 114.0 92 65.2
Thecc.09G106900 Theobroma cacao HOM05D003456 ORTHO05D004082 5.3e-24 114.0 92 66.3
ATR0789G023 Amborella trichopoda HOM05D003456 ORTHO05D004082 6.9e-24 113.6 92 65.2
AUR62023392 Chenopodium quinoa HOM05D003456 ORTHO05D004082 6.9e-24 113.6 92 64.1
Gohir.D09G011800 Gossypium hirsutum HOM05D003456 ORTHO05D004082 6.9e-24 113.6 92 66.3
Gorai.006G013800 Gossypium raimondii HOM05D003456 ORTHO05D004082 6.9e-24 113.6 92 65.2
PGR044G1450 Punica granatum HOM05D003456 ORTHO05D004082 6.9e-24 113.6 92 64.1
ClCG05G021780 Citrullus lanatus HOM05D003456 ORTHO05D004082 9.1e-24 113.2 92 65.2
Sabra10G0187000 Salix brachista HOM05D003456 ORTHO05D004082 9.1e-24 113.2 92 64.1
SalBow6G0069 Salvia bowleyana HOM05D003456 ORTHO05D004082 9.1e-24 113.2 92 64.1
Ciclev10017146m.g Citrus clementina HOM05D003456 ORTHO05D004082 1.2e-23 112.8 92 63.0
Duzib128G1248 Durio zibethinus HOM05D003456 ORTHO05D004082 1.2e-23 112.8 92 65.2
Lsat_1_v5_gn_8_24141 Lactuca sativa HOM05D003456 ORTHO05D004082 1.2e-23 112.8 92 64.1
Aqoxy2G01205 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 1.5e-23 112.5 92 64.1
Potri.010G238800 Populus trichocarpa HOM05D003456 ORTHO05D004082 1.5e-23 112.5 92 64.1
QL07p039199 Quercus lobata HOM05D003456 ORTHO05D004082 1.5e-23 112.5 92 63.0
CSS0039541 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 2.0e-23 112.1 92 65.2
CiPaw.09G013300 Carya illinoinensis HOM05D003456 ORTHO05D004082 2.0e-23 112.1 91 63.7
ClCG05G018420 Citrullus lanatus HOM05D003456 ORTHO05D004082 2.0e-23 112.1 92 64.1
MELO3C012350.2 Cucumis melo HOM05D003456 ORTHO05D004082 2.0e-23 112.1 92 64.1
CsaV3_5G035380 Cucumis sativus L. HOM05D003456 ORTHO05D004082 2.0e-23 112.1 92 64.1
Dinv09618 Davidia involucrata HOM05D003456 ORTHO05D004082 2.0e-23 112.1 92 65.2
Medtr1g060070 Medicago truncatula HOM05D003456 ORTHO05D004082 2.0e-23 112.1 92 65.2
Atru.chr12.1024 Acer truncatum HOM05D003456 ORTHO05D004082 2.6e-23 111.7 92 63.0
Aqoxy1G03742 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 2.6e-23 111.7 92 63.0
Aqoxy3G02826 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 2.6e-23 111.7 92 63.0
Cpa.g.sc56.14 Carica papaya HOM05D003456 ORTHO05D004082 2.6e-23 111.7 92 62.0
Dinv21215 Davidia involucrata HOM05D003456 ORTHO05D004082 2.6e-23 111.7 92 64.1
Sed0026028 Sechium edule HOM05D003456 ORTHO05D004082 2.6e-23 111.7 92 64.1
THA.LOC104804331 Tarenaya hassleriana HOM05D003456 ORTHO05D004082 2.6e-23 111.7 92 62.0
Potri.008G020400 Populus trichocarpa HOM05D003456 ORTHO05D004082 3.4e-23 111.3 92 63.0
Sabra08G0013700 Salix brachista HOM05D003456 ORTHO05D004082 3.4e-23 111.3 92 63.0
CAN.G397.10 Capsicum annuum HOM05D003456 ORTHO05D004082 4.5e-23 110.9 92 63.0
Sopen09g004180 Solanum pennellii HOM05D003456 ORTHO05D004082 4.5e-23 110.9 92 63.0
Aa31LG8G13940 Aethionema arabicum HOM05D003456 ORTHO05D004082 5.9e-23 110.5 92 59.8
Cc00_g28380 Coffea canephora HOM05D003456 ORTHO05D004082 7.7e-23 110.2 88 69.3
Sc09g0005350 Simmondsia chinensis HOM05D003456 ORTHO05D004082 7.7e-23 110.2 92 62.0
AL3G49380 Arabidopsis lyrata HOM05D003456 ORTHO05D004082 1.0e-22 109.8 92 60.9
AT2G16710 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 1.0e-22 109.8 92 60.9
Carub.0001s3604 Capsella rubella HOM05D003456 ORTHO05D004082 1.0e-22 109.8 92 60.9
Carub.0003s3046 Capsella rubella HOM05D003456 ORTHO05D004082 1.0e-22 109.8 92 60.9
Sp3g30040 Schrenkiella parvula HOM05D003456 ORTHO05D004082 1.0e-22 109.8 92 60.9
BcaB08g34660 Brassica carinata HOM05D003456 ORTHO05D004082 1.3e-22 109.4 92 59.8
BcaC01g02994 Brassica carinata HOM05D003456 ORTHO05D004082 1.3e-22 109.4 92 59.8
A03p45960 Brassica napus HOM05D003456 ORTHO05D004082 1.3e-22 109.4 92 59.8
C03p57360 Brassica napus HOM05D003456 ORTHO05D004082 1.3e-22 109.4 92 59.8
CARHR106940 Cardamine hirsuta HOM05D003456 ORTHO05D004082 1.3e-22 109.4 92 59.8
Migut.F00877 Erythranthe guttata HOM05D003456 ORTHO05D004082 1.3e-22 109.4 101 62.4
Thhalv10022903m.g Eutrema salsugineum HOM05D003456 ORTHO05D004082 1.3e-22 109.4 92 59.8
PSO151G0153 Papaver somniferum HOM05D003456 ORTHO05D004082 1.3e-22 109.4 92 60.9
PSO170G1366 Papaver somniferum HOM05D003456 ORTHO05D004082 1.3e-22 109.4 92 60.9
PSO407G0116 Papaver somniferum HOM05D003456 ORTHO05D004082 1.3e-22 109.4 92 60.9
Os12g0485500 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 2.2e-22 108.6 92 59.8
QL04p044862 Quercus lobata HOM05D003456 ORTHO05D004082 2.9e-22 108.2 92 59.8
BcaB07g31755 Brassica carinata HOM05D003456 ORTHO05D004082 5.0e-22 107.5 92 59.8
A09p11090 Brassica napus HOM05D003456 ORTHO05D004082 5.0e-22 107.5 92 59.8
BraA09t36751Z Brassica rapa HOM05D003456 ORTHO05D004082 5.0e-22 107.5 92 59.8
Cpa.g.sc5.27 Carica papaya HOM05D003456 ORTHO05D004082 5.0e-22 107.5 92 62.0
DCAR_020755 Daucus carota HOM05D003456 ORTHO05D004082 5.0e-22 107.5 92 60.9
Os01g0105800 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 6.5e-22 107.1 92 60.9
Rhsim09G0141900 Rhododendron simsii HOM05D003456 ORTHO05D004082 6.5e-22 107.1 102 57.8
Zm00001eb126830 Zea mays HOM05D003456 ORTHO05D004082 6.5e-22 107.1 92 60.9
FAN02G4247 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.1e-21 106.3 128 52.3
CDE02G3384 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 1.4e-21 105.9 92 60.9
Ciclev10013682m.g Citrus clementina HOM05D003456 ORTHO05D004082 1.4e-21 105.9 110 54.5
Sc20g0001150 Simmondsia chinensis HOM05D003456 ORTHO05D004082 1.9e-21 105.5 92 59.8
Zm00001eb334200 Zea mays HOM05D003456 ORTHO05D004082 1.9e-21 105.5 92 58.7
Cc05_g02390 Coffea canephora HOM05D003456 ORTHO05D004082 2.5e-21 105.1 88 67.0
Pp3c18_19580 Physcomitrium patens HOM05D003456 ORTHO05D004082 2.5e-21 105.1 92 56.5
Mapoly0089s0049 Marchantia polymorpha HOM05D003456 ORTHO05D004082 5.5e-21 104.0 92 55.4
VMungo1383G3423 Vigna mungo HOM05D003456 ORTHO05D004082 5.5e-21 104.0 86 66.3
BolC3t18012H Brassica oleracea HOM05D003456 ORTHO05D004082 1.6e-20 102.4 99 54.5
PSO339G3466 Papaver somniferum HOM05D003456 ORTHO05D004082 1.6e-20 102.4 92 58.7
BcaC04g23009 Brassica carinata HOM05D003456 ORTHO05D004082 4.7e-20 100.9 96 56.2
C09p13080 Brassica napus HOM05D003456 ORTHO05D004082 4.7e-20 100.9 96 56.2
BraA03t13724Z Brassica rapa HOM05D003456 ORTHO05D004082 7.9e-20 100.1 105 51.4
CBR_g4764 Chara braunii HOM05D003456 ORTHO05D004082 7.9e-20 100.1 92 55.4
AagrBONN_evm.TU.Sc2ySwM_362.959 Anthoceros agrestis HOM05D003456 ORTHO05D004082 1.8e-19 99.0 92 55.4
Nitab4.5_0005483g0040 Nicotiana tabacum HOM05D003456 ORTHO05D004082 1.8e-19 99.0 82 63.4
Oeu054399.2 Olea europaea HOM05D003456 ORTHO05D004082 6.7e-19 97.1 124 47.6
Gohir.A09G013133 Gossypium hirsutum HOM05D003456 ORTHO05D004082 1.1e-18 96.3 81 61.7
vmacro10309 Vaccinium macrocarpon HOM05D003456 ORTHO05D004082 1.1e-18 96.3 133 44.4
SMO147G0221 Selaginella moellendorffii HOM05D003456 ORTHO05D004082 4.4e-18 94.4 92 51.1
RcHm_v2.0_Chr7g0219151 Rosa chinensis HOM05D003456 ORTHO05D004082 5.7e-18 94.0 90 55.6
AT2G36260 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 2.8e-17 91.7 92 51.1
Aa31LG5G21390 Aethionema arabicum HOM05D003456 ORTHO05D004082 3.7e-17 91.3 92 50.0
Actinidia31104 Actinidia chinensis HOM05D003456 ORTHO05D004082 7.0e-16 87.0 77 64.9
Hund22272 Selenicereus undatus HOM05D003456 ORTHO05D004082 9.1e-16 86.7 76 65.8
QL07p038879 Quercus lobata HOM05D003456 ORTHO05D004082 2.0e-15 85.5 87 56.3
MCO14G517 Micromonas commoda HOM05D003456 ORTHO05D004082 3.5e-15 84.7 96 44.8
Psat6g013760 Pisum sativum HOM05D003456 ORTHO05D004082 3.5e-15 84.7 76 64.5
DCAR_009160 Daucus carota HOM05D003456 ORTHO05D004082 4.5e-15 84.3 80 58.8
Nitab4.5_0001725g0170 Nicotiana tabacum HOM05D003456 ORTHO05D004082 2.9e-14 81.6 74 58.1
Nn2g14150 Nelumbo nucifera HOM05D003456 ORTHO05D004082 3.8e-14 81.3 76 60.5
Oeu024811.2 Olea europaea HOM05D003456 ORTHO05D004082 6.5e-14 80.5 82 57.3
Nn6g34911 Nelumbo nucifera HOM05D003456 ORTHO05D004082 1.4e-11 72.8 56 66.1
PGR031G3484 Punica granatum HOM05D003456 ORTHO05D004082 3.0e-11 71.6 64 57.8
Cre09.g400775 Chlamydomonas reinhardtii HOM05D003456 ORTHO05D004082 1.1e-10 69.7 76 51.3
Peaxi162Scf00290g00816 Petunia axillaris HOM05D003456 ORTHO05D004082 1.5e-10 69.3 91 47.3
Haze_26136 Corylus avellana HOM05D003456 ORTHO05D004082 1.3e-09 66.2 93 36.6
PGSC0003DMG402002701 Solanum tuberosum HOM05D003456 ORTHO05D004082 2.4e-08 62.0 61 52.5
Solyc09g009460.4 Solanum lycopersicum HOM05D003456 ORTHO05D004082 3.1e-08 61.6 60 53.3
ATR0789G158 Amborella trichopoda HOM05D003456 ORTHO05D004082 5.3e-08 60.8 36 83.3
HanXRQChr12g0368091 Helianthus annuus HOM05D003456 ORTHO05D004082 7.0e-08 60.5 52 57.7
Hund06781 Selenicereus undatus HOM05D003456 ORTHO05D004082 7.0e-08 60.5 39 76.9
Hund06783 Selenicereus undatus HOM05D003456 ORTHO05D004082 1.2e-07 59.7 45 68.9
PGSC0003DMG401002701 Solanum tuberosum HOM05D003456 ORTHO05D004082 2.0e-07 58.9 37 78.4
Solyc09g009440.3 Solanum lycopersicum HOM05D003456 ORTHO05D004082 4.5e-07 57.8 36 77.8
Thecc.05G088300 Theobroma cacao HOM05D003456 ORTHO05D004082 4.5e-07 57.8 52 55.8
PRCOL_00003093 Prasinoderma coloniale HOM05D003456 ORTHO05D004082 5.9e-07 57.4 68 44.1
CDE11G1238 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 1.7e-06 55.8 36 75.0
SEGI_09582 Sequoiadendron giganteum HOM05D003456 ORTHO05D004082 5.0e-06 54.3 52 50.0
Cfa025191 Carpinus fangiana HOM05D003456 ORTHO05D124956 6.5e-06 53.9 84 36.9
PGR142G0161 Punica granatum HOM05D003456 ORTHO05D004082 6.5e-06 53.9 52 51.9


User provided reference genes

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