Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0244971 Rosa chinensis HOM05D004890 ORTHO05D005869 3.1e-193 678.3 346 100.0
RcHm_v2.0_Chr6g0245441 Rosa chinensis HOM05D004890 ORTHO05D005869 1.7e-119 433.3 278 84.2
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 3.8e-119 432.2 361 69.3
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 6.1e-117 424.9 267 85.8
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 4.1e-105 385.6 361 62.9
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 3.5e-104 382.5 361 62.3
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 3.5e-104 382.5 361 62.3
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.7e-103 380.2 361 61.8
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 8.8e-100 367.9 361 60.7
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 1.3e-98 364.0 456 51.5
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 1.5e-78 297.4 160 93.8
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 1.9e-70 270.4 312 52.9
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.9e-65 253.8 275 56.0
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 2.7e-64 250.0 365 45.2
MD10G1117500 Malus domestica HOM05D004890 ORTHO05D005869 3.6e-61 239.6 276 52.2
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 8.7e-55 218.4 319 42.3
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 1.8e-52 210.7 329 43.5
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 5.1e-47 192.6 328 40.9
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 4.2e-41 172.9 340 40.3
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 1.9e-38 164.1 288 38.9
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 6.9e-36 155.6 293 36.5
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 1.2e-35 154.8 311 36.7
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 1.2e-35 154.8 305 35.4
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 5.8e-35 152.5 260 38.1
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 9.9e-35 151.8 316 34.8
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 2.9e-34 150.2 340 36.5
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 1.6e-29 134.4 321 34.0
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 1.6e-29 134.4 270 39.3
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 2.8e-29 133.7 277 37.9
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 6.2e-29 132.5 277 38.3
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 1.1e-28 131.7 92 77.2
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 9.0e-28 128.6 259 36.3
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 2.0e-27 127.5 320 33.8
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 4.5e-27 126.3 278 37.8
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 4.5e-27 126.3 324 34.3
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 5.8e-27 125.9 268 36.2
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 7.6e-27 125.6 323 32.5
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 1.3e-26 124.8 294 34.4
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 2.2e-26 124.0 302 34.1
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 3.8e-26 123.2 322 32.9
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 8.4e-26 122.1 305 32.5
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 2.5e-25 120.6 276 35.5
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 1.2e-24 118.2 319 32.0
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 2.1e-24 117.5 316 32.0
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 4.6e-24 116.3 295 32.5
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 6.0e-24 115.9 320 33.4
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 3.0e-23 113.6 300 29.3
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 1.5e-22 111.3 280 32.1
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 2.5e-22 110.5 286 31.1
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 1.3e-21 108.2 313 30.7
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 2.2e-21 107.5 286 31.1
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 1.8e-20 104.4 310 27.7
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 6.9e-20 102.4 328 28.4
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 1.5e-19 101.3 312 29.8
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 7.7e-19 99.0 310 31.0
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 7.7e-19 99.0 297 30.0
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 7.7e-19 99.0 319 30.1
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 1.7e-18 97.8 261 31.0
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 2.9e-18 97.1 309 31.7
SHI05679 Sapria himalayana HOM05D004890 ORTHO05D005869 4.6e-16 89.7 281 30.2
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 6.1e-16 89.4 259 30.9
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 6.1e-16 89.4 262 30.2
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 6.1e-16 89.4 289 29.1
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 1.8e-15 87.8 289 29.1
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 6.7e-15 85.9 260 31.5
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 3.3e-14 83.6 296 29.1
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 3.3e-14 83.6 259 29.0
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 5.7e-14 82.8 312 25.3
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 9.7e-14 82.0 311 27.3
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 1.3e-13 81.6 266 28.9
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 4.8e-13 79.7 287 28.9
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 6.3e-13 79.3 286 24.8
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 1.1e-12 78.6 268 27.6
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 1.8e-12 77.8 270 28.5
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 9.1e-12 75.5 317 26.2
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 4.5e-11 73.2 284 27.5
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 5.9e-11 72.8 266 27.4
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 7.7e-11 72.4 263 30.0
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 7.7e-11 72.4 284 26.8
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 1.0e-10 72.0 275 27.3
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 1.3e-10 71.6 44 79.5
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 1.7e-10 71.2 302 24.8
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 6.5e-10 69.3 262 26.7
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 1.9e-09 67.8 269 26.8
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 4.2e-09 66.6 271 25.8
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 4.2e-09 66.6 271 25.8
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 4.2e-09 66.6 262 26.3
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 9.4e-09 65.5 294 25.2
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 9.4e-09 65.5 77 51.9
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 9.4e-09 65.5 259 27.0
RcHm_v2.0_Chr6g0244891 Rosa chinensis HOM05D004890 ORTHO05D005869 1.2e-08 65.1 44 77.3
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 2.7e-08 63.9 275 28.4
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 4.7e-08 63.2 290 24.5
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 6.7e-07 59.3 295 26.4
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 1.5e-06 58.2 323 25.4
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 2.0e-06 57.8 286 25.9
MD10G1117600 Malus domestica HOM05D004890 ORTHO05D005869 3.3e-06 57.0 51 62.7
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 5.7e-06 56.2 267 26.6
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 5.7e-06 56.2 166 28.3


User provided reference genes

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