Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0244961 Rosa chinensis HOM05D004890 ORTHO05D005869 5.9e-79 297.4 139 100.0
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 6.3e-57 224.2 169 69.8
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 6.6e-54 214.2 157 71.3
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 4.3e-53 211.5 169 68.0
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.2e-50 203.4 169 65.1
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.2e-50 203.4 169 65.1
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.2e-50 203.4 169 65.1
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.5e-50 203.0 169 65.1
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 2.2e-49 199.1 169 63.9
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 9.2e-40 167.2 169 55.6
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 2.0e-39 166.0 169 55.0
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 3.5e-39 165.2 148 62.8
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 7.8e-31 137.5 169 46.7
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 5.1e-30 134.8 169 46.2
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 5.6e-29 131.3 169 44.4
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 3.6e-28 128.6 169 43.8
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 6.2e-28 127.9 169 44.4
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 1.2e-26 123.6 169 42.0
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 5.8e-26 121.3 169 40.2
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 9.9e-26 120.6 169 43.2
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 8.4e-25 117.5 169 42.0
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 1.9e-24 116.3 169 40.8
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 1.9e-24 116.3 169 40.8
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 2.4e-24 115.9 169 40.8
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 3.2e-24 115.5 169 40.2
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 7.1e-24 114.4 169 39.6
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 1.2e-23 113.6 169 39.1
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 2.7e-23 112.5 170 38.8
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 4.6e-23 111.7 169 40.2
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 2.3e-22 109.4 169 39.6
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 3.0e-22 109.0 169 40.8
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 6.6e-22 107.8 170 37.1
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 6.6e-22 107.8 168 40.5
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 8.6e-22 107.5 170 37.6
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 8.6e-22 107.5 174 39.7
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 3.3e-21 105.5 170 37.6
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 3.3e-21 105.5 170 37.6
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 7.3e-21 104.4 115 50.4
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 2.1e-20 102.8 173 39.3
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 3.6e-20 102.1 146 45.2
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 3.6e-20 102.1 169 38.5
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 1.4e-19 100.1 166 38.0
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 1.4e-19 100.1 173 38.7
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 1.8e-19 99.8 166 36.7
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 3.1e-19 99.0 163 37.4
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 8.9e-19 97.4 166 38.0
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 8.9e-19 97.4 170 35.9
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 2.0e-18 96.3 169 39.1
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 5.8e-18 94.7 166 38.0
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 5.8e-18 94.7 174 35.6
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 1.7e-17 93.2 166 37.3
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 2.2e-17 92.8 168 33.9
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 2.2e-17 92.8 168 36.3
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 3.8e-17 92.0 166 36.1
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 4.9e-17 91.7 169 36.7
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 1.1e-16 90.5 174 33.9
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 1.1e-16 90.5 169 32.5
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 1.4e-16 90.1 169 35.5
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 1.9e-16 89.7 169 37.3
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 1.9e-16 89.7 170 38.2
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 1.9e-16 89.7 168 36.3
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 2.4e-16 89.4 169 36.1
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 2.4e-16 89.4 168 35.7
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 3.2e-16 89.0 169 37.9
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 5.4e-16 88.2 169 36.1
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 5.4e-16 88.2 173 35.3
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 7.1e-16 87.8 168 35.1
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 7.1e-16 87.8 169 35.5
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 9.3e-16 87.4 173 37.6
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 1.6e-15 86.7 175 37.1
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 2.1e-15 86.3 162 35.2
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 2.7e-15 85.9 169 34.3
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 2.7e-15 85.9 169 35.5
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 3.5e-15 85.5 162 34.6
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 3.5e-15 85.5 162 34.6
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 3.5e-15 85.5 162 34.6
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 4.6e-15 85.1 112 41.1
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 4.6e-15 85.1 112 41.1
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 4.6e-15 85.1 169 36.1
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 7.8e-15 84.3 164 33.5
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 1.0e-14 84.0 166 35.5
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 3.9e-14 82.0 171 33.3
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 5.1e-14 81.6 171 33.3
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 1.1e-13 80.5 167 35.3
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 2.5e-13 79.3 165 35.2
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 5.6e-13 78.2 169 34.3
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 7.3e-13 77.8 171 35.1
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 1.6e-12 76.6 151 31.8
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 2.8e-12 75.9 170 31.8
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 8.1e-12 74.3 169 31.4
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 1.1e-11 73.9 171 31.6
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 6.9e-11 71.2 170 28.8
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 9.0e-11 70.9 138 35.5
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 2.0e-10 69.7 146 35.6
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 2.6e-10 69.3 69 53.6
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 6.4e-09 64.7 151 33.8
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 6.4e-09 64.7 169 26.6
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 1.2e-07 60.5 165 28.5
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 3.5e-07 58.9 80 42.5
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 1.3e-06 57.0 50 54.0
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 2.3e-06 56.2 151 30.5


User provided reference genes

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