Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0244921 Rosa chinensis HOM05D004890 ORTHO05D005869 6.7e-63 243.8 121 100.0
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 5.9e-51 204.1 113 91.2
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 1.5e-49 199.5 113 89.4
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 1.2e-43 179.9 112 80.4
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.2e-43 179.9 112 80.4
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 7.7e-43 177.2 112 78.6
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.5e-41 172.9 112 78.6
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.5e-41 172.9 112 78.6
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 9.8e-38 160.2 113 70.8
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 4.9e-37 157.9 112 68.8
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 8.3e-37 157.1 110 71.8
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 1.4e-28 129.8 113 62.8
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 3.5e-27 125.2 113 56.6
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 3.0e-26 122.1 112 54.5
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 5.0e-26 121.3 115 54.8
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 1.5e-25 119.8 116 56.9
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 2.5e-25 119.0 116 54.3
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 5.6e-25 117.9 113 56.6
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 5.6e-25 117.9 116 54.3
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 3.6e-24 115.2 118 54.2
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 8.9e-23 110.5 118 51.7
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 2.0e-22 109.4 113 52.2
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 2.6e-22 109.0 116 53.4
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 4.4e-22 108.2 116 51.7
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 4.4e-22 108.2 116 51.7
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 7.5e-22 107.5 117 51.3
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 9.8e-22 107.1 117 52.1
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 2.2e-21 105.9 115 47.8
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 2.9e-21 105.5 113 47.8
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 1.9e-20 102.8 102 51.0
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 3.2e-20 102.1 116 47.4
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 5.4e-20 101.3 117 47.9
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 7.0e-20 100.9 116 49.1
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 1.2e-19 100.1 115 50.4
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 1.6e-19 99.8 113 49.6
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 2.0e-19 99.4 115 50.4
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 2.7e-19 99.0 116 46.6
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 3.5e-19 98.6 114 49.1
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 4.6e-19 98.2 110 48.2
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 1.0e-18 97.1 112 47.3
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 1.3e-18 96.7 112 47.3
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 2.3e-18 95.9 116 50.0
Glyma.08G231200 Glycine max HOM05D004890 ORTHO05D005869 2.3e-18 95.9 114 48.2
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 3.0e-18 95.5 105 50.5
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 3.9e-18 95.1 107 50.5
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 3.3e-17 92.0 115 45.2
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 3.3e-17 92.0 114 50.9
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 4.3e-17 91.7 116 41.4
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 9.5e-17 90.5 112 46.4
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 9.5e-17 90.5 105 45.7
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 9.5e-17 90.5 106 48.1
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 2.1e-16 89.4 123 44.7
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 2.1e-16 89.4 112 45.5
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 2.1e-16 89.4 113 46.0
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 2.8e-16 89.0 123 44.7
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 2.8e-16 89.0 112 42.9
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 6.2e-16 87.8 114 48.2
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 6.2e-16 87.8 106 46.2
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 6.2e-16 87.8 106 48.1
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 1.4e-15 86.7 124 44.4
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 2.3e-15 85.9 109 45.0
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 2.3e-15 85.9 113 39.8
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 4.0e-15 85.1 113 46.0
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 5.2e-15 84.7 124 39.5
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 8.9e-15 84.0 114 46.5
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 8.9e-15 84.0 114 46.5
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 8.9e-15 84.0 109 46.8
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 8.9e-15 84.0 112 42.0
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 8.9e-15 84.0 117 41.9
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 1.2e-14 83.6 112 42.0
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 1.2e-14 83.6 112 42.0
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 1.5e-14 83.2 114 42.1
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 2.6e-14 82.4 107 40.2
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 9.8e-14 80.5 117 45.3
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 1.3e-13 80.1 129 42.6
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 1.3e-13 80.1 112 42.9
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 1.3e-13 80.1 112 46.4
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 1.7e-13 79.7 113 39.8
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 2.2e-13 79.3 112 42.0
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 2.9e-13 79.0 112 37.5
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 2.9e-13 79.0 113 40.7
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 4.9e-13 78.2 107 39.3
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 8.3e-13 77.4 100 41.0
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 1.1e-12 77.0 110 40.0
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 1.1e-12 77.0 112 40.2
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 1.9e-12 76.3 113 40.7
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 2.4e-12 75.9 112 39.3
Psat2g036680 Pisum sativum HOM05D004890 ORTHO05D005869 3.2e-12 75.5 90 46.7
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 7.1e-12 74.3 112 45.5
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 6.0e-11 71.2 112 36.6
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 6.0e-11 71.2 112 41.1
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 7.8e-11 70.9 110 40.0
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 3.0e-10 68.9 100 38.0
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 3.9e-10 68.6 113 37.2
RcHm_v2.0_Chr6g0245351 Rosa chinensis HOM05D004890 ORTHO05D005869 8.6e-10 67.4 38 81.6
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 3.3e-09 65.5 119 38.7
RcHm_v2.0_Chr6g0245541 Rosa chinensis HOM05D004890 ORTHO05D005869 3.3e-09 65.5 39 84.6
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 4.3e-09 65.1 102 36.3
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 1.2e-08 63.5 35 85.7
HPP92_020638 Vanilla planifolia HOM05D004890 ORTHO05D005869 8.1e-08 60.8 103 35.9
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 9.9e-06 53.9 113 32.7


User provided reference genes

Program Settings