Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 1.3e-207 726.1 363 100.0
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 3.3e-166 588.6 339 89.7
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 1.1e-164 583.6 339 88.5
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.4e-151 540.0 339 82.3
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 5.2e-151 538.1 339 82.0
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.5e-150 536.6 339 82.0
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 9.8e-150 533.9 339 81.4
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.6e-144 516.5 339 79.9
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 7.3e-113 411.4 358 63.4
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 3.0e-106 389.4 363 60.6
RcHm_v2.0_Chr6g0245531 Rosa chinensis HOM05D004890 ORTHO05D005869 2.3e-98 363.2 227 83.7
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 1.6e-80 303.9 364 49.7
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 8.5e-69 265.0 368 44.0
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 9.7e-65 251.5 358 45.0
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 1.1e-63 248.1 364 46.2
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 3.8e-61 239.6 358 43.9
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 1.1e-60 238.0 364 43.1
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 7.9e-59 231.9 369 41.2
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 2.3e-58 230.3 357 42.0
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 6.3e-56 222.2 357 41.2
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 1.1e-52 211.5 370 40.8
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 4.2e-52 209.5 309 42.7
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 8.0e-51 205.3 140 77.1
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 5.2e-50 202.6 319 42.6
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 6.7e-50 202.2 359 39.8
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 2.0e-49 200.7 365 38.4
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 1.7e-48 197.6 357 37.0
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 1.7e-48 197.6 359 39.3
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 3.7e-48 196.4 352 38.9
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 3.1e-47 193.4 354 39.5
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 9.1e-47 191.8 351 37.3
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 2.0e-46 190.7 357 36.1
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 2.0e-46 190.7 359 38.7
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 3.5e-46 189.9 358 36.6
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 4.5e-46 189.5 360 38.1
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 4.5e-46 189.5 356 37.6
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 1.0e-45 188.3 350 37.4
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 1.7e-45 187.6 351 36.8
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 2.2e-45 187.2 363 38.6
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 2.9e-45 186.8 351 37.0
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 1.1e-44 184.9 358 38.0
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 1.6e-43 181.0 312 37.5
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 1.6e-43 181.0 362 37.0
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 2.1e-43 180.6 361 36.6
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 2.7e-43 180.3 362 39.0
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 4.7e-43 179.5 302 38.7
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 1.4e-42 177.9 306 35.9
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 2.0e-41 174.1 361 36.3
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 6.3e-40 169.1 360 33.3
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 1.1e-39 168.3 341 35.5
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 9.1e-39 165.2 298 36.2
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 1.6e-38 164.5 345 33.9
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 4.5e-38 162.9 364 34.1
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 2.2e-37 160.6 331 35.6
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 6.5e-37 159.1 287 35.5
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 6.5e-37 159.1 310 36.1
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 8.5e-37 158.7 351 33.9
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 1.5e-36 157.9 292 37.3
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 1.5e-36 157.9 292 36.6
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 1.5e-36 157.9 300 37.3
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 9.4e-36 155.2 343 32.9
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 6.1e-35 152.5 332 37.0
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 1.0e-34 151.8 344 33.1
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 1.0e-34 151.8 348 33.3
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 1.4e-34 151.4 332 34.6
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 1.8e-34 151.0 349 31.2
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 4.0e-34 149.8 364 32.7
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 5.2e-34 149.4 332 35.2
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 5.2e-34 149.4 303 34.3
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 2.6e-33 147.1 332 34.3
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 7.5e-33 145.6 298 34.9
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 7.5e-33 145.6 298 35.9
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 9.8e-33 145.2 291 33.7
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 1.3e-32 144.8 288 33.0
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 1.3e-32 144.8 332 34.0
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 2.0e-30 137.5 286 33.6
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 4.5e-30 136.3 288 36.8
RcHm_v2.0_Chr6g0244971 Rosa chinensis HOM05D004890 ORTHO05D005869 1.3e-29 134.8 92 77.2
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 2.3e-29 134.0 290 35.5
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 3.8e-29 133.3 339 30.1
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 6.6e-29 132.5 293 34.1
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 4.2e-28 129.8 287 34.1
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 4.2e-28 129.8 287 34.1
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 9.5e-28 128.6 290 34.1
RcHm_v2.0_Chr6g0245441 Rosa chinensis HOM05D004890 ORTHO05D005869 9.5e-28 128.6 92 73.9
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 1.2e-27 128.3 351 30.5
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 3.6e-27 126.7 332 31.9
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 4.7e-27 126.3 334 30.5
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 6.1e-27 125.9 358 28.5
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 8.0e-27 125.6 291 32.3
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 8.0e-27 125.6 322 31.1
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 5.2e-26 122.9 280 29.6
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 2.0e-25 120.9 92 70.7
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 5.7e-25 119.4 335 31.3
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 1.7e-24 117.9 289 31.1
MD10G1117400 Malus domestica HOM05D004890 ORTHO05D005869 9.2e-23 112.1 79 69.6
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 1.6e-19 101.3 206 35.9
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 4.7e-19 99.8 285 27.7
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 1.4e-18 98.2 300 26.7
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 1.2e-17 95.1 310 29.0
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 1.2e-14 85.1 243 25.9
Glyma.08G231200 Glycine max HOM05D004890 ORTHO05D005869 7.8e-14 82.4 105 45.7
MD10G1117300 Malus domestica HOM05D004890 ORTHO05D005869 2.3e-13 80.9 71 63.4
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 3.0e-13 80.5 169 34.3


User provided reference genes

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