Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 3.5e-56 221.5 119 100.0
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 2.3e-23 112.5 102 65.7
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.3e-22 108.6 110 58.2
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.7e-22 107.8 114 57.9
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.3e-21 106.7 117 56.4
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.6e-21 106.3 113 57.5
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 6.3e-21 104.4 115 55.7
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 3.2e-17 92.0 105 55.2
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.4e-15 86.7 97 53.6
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.5e-14 83.2 89 55.1
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 2.5e-14 82.4 112 47.3
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 2.5e-14 82.4 110 50.0
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 4.3e-14 81.6 77 59.7
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 5.7e-14 81.3 130 43.1
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 7.4e-14 80.9 115 47.0
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.3e-13 80.1 64 67.2
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.3e-13 80.1 120 49.2
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.7e-13 79.7 95 52.6
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.2e-13 79.3 108 47.2
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 2.8e-13 79.0 63 66.7
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 2.8e-13 79.0 63 66.7
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 2.8e-13 79.0 98 49.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 2.8e-13 79.0 123 45.5
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 3.7e-13 78.6 118 49.2
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 6.3e-13 77.8 114 44.7
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 6.3e-13 77.8 115 43.5
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 6.3e-13 77.8 115 43.5
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 6.3e-13 77.8 111 51.4
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 8.2e-13 77.4 64 64.1
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 8.2e-13 77.4 98 48.0
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 8.2e-13 77.4 121 49.6
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 8.2e-13 77.4 76 55.3
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.1e-12 77.0 106 48.1
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 1.1e-12 77.0 112 45.5
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.1e-12 77.0 111 47.7
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.1e-12 77.0 108 42.6
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.4e-12 76.6 118 47.5
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.4e-12 76.6 84 54.8
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.8e-12 76.3 112 47.3
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.8e-12 76.3 97 48.5
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.8e-12 76.3 63 66.7
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.4e-12 75.9 64 62.5
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 2.4e-12 75.9 88 52.3
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.1e-12 75.5 112 45.5
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 3.1e-12 75.5 61 67.2
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 4.1e-12 75.1 108 41.7
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 5.3e-12 74.7 61 65.6
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 6.9e-12 74.3 110 45.5
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 9.1e-12 73.9 123 43.1
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 9.1e-12 73.9 82 53.7
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 9.1e-12 73.9 66 60.6
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 9.1e-12 73.9 62 62.9
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.2e-11 73.6 120 45.0
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 1.5e-11 73.2 62 62.9
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 1.5e-11 73.2 61 65.6
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.5e-11 73.2 78 51.3
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.5e-11 73.2 57 66.7
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.5e-11 73.2 109 48.6
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.5e-11 73.2 111 44.1
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.5e-11 73.2 61 63.9
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.0e-11 72.8 61 63.9
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.0e-11 72.8 63 61.9
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 2.0e-11 72.8 61 63.9
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 2.0e-11 72.8 97 49.5
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 2.6e-11 72.4 61 65.6
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 2.6e-11 72.4 107 45.8
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.6e-11 72.4 86 48.8
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.6e-11 72.4 111 41.4
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.4e-11 72.0 107 45.8
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 3.4e-11 72.0 61 63.9
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 3.4e-11 72.0 109 47.7
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 3.4e-11 72.0 59 64.4
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 3.4e-11 72.0 92 46.7
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 4.5e-11 71.6 63 61.9
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 5.9e-11 71.2 61 62.3
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 5.9e-11 71.2 105 46.7
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 5.9e-11 71.2 89 50.6
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 7.7e-11 70.9 111 45.0
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 7.7e-11 70.9 111 45.0
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 7.7e-11 70.9 100 44.0
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 7.7e-11 70.9 59 62.7
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 7.7e-11 70.9 59 62.7
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 7.7e-11 70.9 59 62.7
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 7.7e-11 70.9 108 44.4
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.0e-10 70.5 99 48.5
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 1.0e-10 70.5 98 49.0
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.0e-10 70.5 61 62.3
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.0e-10 70.5 98 45.9
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.3e-10 70.1 113 40.7
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.3e-10 70.1 62 59.7
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.7e-10 69.7 61 62.3
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.7e-10 69.7 61 62.3
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.7e-10 69.7 64 59.4
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.7e-10 69.7 61 62.3
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.7e-10 69.7 102 46.1
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.7e-10 69.7 105 45.7
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.7e-10 69.7 74 54.1
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.7e-10 69.7 111 42.3
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.2e-10 69.3 105 44.8
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.9e-10 68.9 61 60.7
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.9e-10 68.9 61 60.7
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 3.8e-10 68.6 57 63.2
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 3.8e-10 68.6 110 44.5
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 3.8e-10 68.6 61 59.0
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 3.8e-10 68.6 113 42.5
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 5.0e-10 68.2 61 60.7
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 5.0e-10 68.2 114 43.9
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 6.5e-10 67.8 55 65.5
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 6.5e-10 67.8 106 44.3
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 8.5e-10 67.4 74 52.7
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 8.5e-10 67.4 113 43.4
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 8.5e-10 67.4 113 43.4
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.1e-09 67.0 110 43.6
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.1e-09 67.0 118 41.5
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.4e-09 66.6 109 44.0
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.5e-09 65.9 104 42.3
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 3.2e-09 65.5 68 54.4
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 4.2e-09 65.1 61 57.4
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 5.5e-09 64.7 61 57.4
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 5.5e-09 64.7 57 56.1
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.2e-08 63.5 61 55.7
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 6.1e-08 61.2 69 53.6
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 6.1e-08 61.2 59 54.2
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 6.1e-08 61.2 52 61.5
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 7.9e-08 60.8 57 52.6
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 3.9e-07 58.5 62 53.2
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 5.7e-06 54.7 59 49.2
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 9.7e-06 53.9 52 53.8
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 9.7e-06 53.9 52 53.8


User provided reference genes

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