Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0244211 Rosa chinensis HOM05D001222 ORTHO05D001195 8.5e-20 99.4 50 100.0
FvH4_3g06560 Fragaria vesca HOM05D001222 ORTHO05D001195 1.1e-14 82.4 49 87.8
FvH4_3g33220 Fragaria vesca HOM05D001222 ORTHO05D001195 1.1e-14 82.4 49 87.8
FAN11G0731 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.1e-14 82.4 49 87.8
FAN11G1960 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.1e-14 82.4 49 87.8
FAN16G0864 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.1e-14 82.4 49 87.8
FAN16G1638 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.1e-14 82.4 49 87.8
FAN21G1973 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.1e-14 82.4 49 87.8
FAN25G3863 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.1e-14 82.4 49 87.8
RcHm_v2.0_Chr5g0012601 Rosa chinensis HOM05D001222 ORTHO05D001195 1.1e-14 82.4 49 87.8
MD05G1292300 Malus domestica HOM05D001222 ORTHO05D001195 4.1e-14 80.5 49 83.7
Prupe.4G073100 Prunus persica HOM05D001222 ORTHO05D001195 9.1e-14 79.3 49 81.6
MD10G1268100 Malus domestica HOM05D001222 ORTHO05D001195 1.2e-13 79.0 49 81.6
Cpa.g.sc17.106 Carica papaya HOM05D001222 ORTHO05D001195 2.6e-13 77.8 49 79.6
Cc00_g12820 Coffea canephora HOM05D001222 ORTHO05D001195 2.6e-13 77.8 49 81.6
Dinv03636 Davidia involucrata HOM05D001222 ORTHO05D001195 2.6e-13 77.8 49 81.6
Actinidia27189 Actinidia chinensis HOM05D001222 ORTHO05D001195 5.9e-13 76.6 49 77.6
MSTRG.7454 Avicennia marina HOM05D001222 ORTHO05D001195 5.9e-13 76.6 49 77.6
TWI73G0017 Tripterygium wilfordii HOM05D001222 ORTHO05D001195 5.9e-13 76.6 49 79.6
ECA236G0311 Erigeron canadensis HOM05D001222 ORTHO05D001195 7.7e-13 76.3 49 77.6
Migut.M00962 Erythranthe guttata HOM05D001222 ORTHO05D001195 7.7e-13 76.3 49 77.6
HanXRQChr04g0116391 Helianthus annuus HOM05D001222 ORTHO05D001195 7.7e-13 76.3 49 77.6
CANSAT35G1947 Cannabis sativa HOM05D001222 ORTHO05D001195 1.0e-12 75.9 49 77.6
Lj1A1181T111 Lonicera japonica HOM05D001222 ORTHO05D001195 1.0e-12 75.9 49 77.6
Manes.15G116700 Manihot esculenta HOM05D001222 ORTHO05D001195 1.0e-12 75.9 49 79.6
Manes.17G064300 Manihot esculenta HOM05D001222 ORTHO05D001195 1.3e-12 75.5 49 79.6
CSS0016930 Camellia sinensis var. sinensis HOM05D001222 ORTHO05D001195 1.7e-12 75.1 49 77.6
Actinidia16750 Actinidia chinensis HOM05D001222 ORTHO05D001195 3.8e-12 73.9 49 75.5
VMungo0251G3507 Vigna mungo HOM05D001222 ORTHO05D001195 3.8e-12 73.9 49 75.5
GSVIVG01021367001 Vitis vinifera HOM05D001222 ORTHO05D001195 3.8e-12 73.9 49 77.6
Atru.chr10.1417 Acer truncatum HOM05D001222 ORTHO05D001195 5.0e-12 73.6 49 75.5
CiPaw.09G130000 Carya illinoinensis HOM05D001222 ORTHO05D001195 5.0e-12 73.6 49 73.5
Haze_05478 Corylus avellana HOM05D001222 ORTHO05D001195 5.0e-12 73.6 49 73.5
Lj2A312T39 Lonicera japonica HOM05D001222 ORTHO05D001195 5.0e-12 73.6 49 73.5
Potri.001G354700 Populus trichocarpa HOM05D001222 ORTHO05D001195 5.0e-12 73.6 49 73.5
Actinidia39544 Actinidia chinensis HOM05D001222 ORTHO05D001195 6.5e-12 73.2 48 75.0
arahy.Tifrunner.gnm1.ann1.PRG0CM Arachis hypogaea HOM05D001222 ORTHO05D001195 6.5e-12 73.2 49 75.5
arahy.Tifrunner.gnm1.ann1.YQR1YM Arachis hypogaea HOM05D001222 ORTHO05D001195 6.5e-12 73.2 49 75.5
Cfa001037 Carpinus fangiana HOM05D001222 ORTHO05D001195 6.5e-12 73.2 49 73.5
Glyma.05G164100 Glycine max HOM05D001222 ORTHO05D001195 6.5e-12 73.2 49 75.5
Actinidia07665 Actinidia chinensis HOM05D001222 ORTHO05D001195 8.5e-12 72.8 49 73.5
Lalb_Chr07g0186131 Lupinus albus HOM05D001222 ORTHO05D001195 8.5e-12 72.8 49 73.5
QL05p060764 Quercus lobata HOM05D001222 ORTHO05D001195 8.5e-12 72.8 49 75.5
Duzib192G0361 Durio zibethinus HOM05D001222 ORTHO05D001195 1.1e-11 72.4 49 69.4
Eucgr.D00347 Eucalyptus grandis HOM05D001222 ORTHO05D001195 1.1e-11 72.4 49 73.5
Hma1.2p1_0012F.1_g007650 Hydrangea macrophylla HOM05D001222 ORTHO05D001195 1.1e-11 72.4 49 73.5
Lalb_Chr13g0295451 Lupinus albus HOM05D001222 ORTHO05D001195 1.1e-11 72.4 49 73.5
Sabra16G0233300 Salix brachista HOM05D001222 ORTHO05D001195 1.1e-11 72.4 49 71.4
Duzib235G0473 Durio zibethinus HOM05D001222 ORTHO05D001195 1.4e-11 72.0 49 69.4
Glyma.08G121300 Glycine max HOM05D001222 ORTHO05D001195 1.4e-11 72.0 49 73.5
Oeu021527.1 Olea europaea HOM05D001222 ORTHO05D001195 1.4e-11 72.0 49 69.4
Phvul.002G244100 Phaseolus vulgaris HOM05D001222 ORTHO05D001195 1.4e-11 72.0 49 73.5
Thecc.06G158300 Theobroma cacao HOM05D001222 ORTHO05D001195 1.4e-11 72.0 49 69.4
TWI09G1376 Tripterygium wilfordii HOM05D001222 ORTHO05D001195 1.4e-11 72.0 49 73.5
SalBow8G2139 Salvia bowleyana HOM05D001222 ORTHO05D001195 1.9e-11 71.6 49 71.4
COL.COLO4_22805 Corchorus olitorius HOM05D001222 ORTHO05D001195 4.2e-11 70.5 49 67.3
CsaV3_1G032820 Cucumis sativus L. HOM05D001222 ORTHO05D001195 4.2e-11 70.5 49 71.4
Potri.011G077500 Populus trichocarpa HOM05D001222 ORTHO05D001195 4.2e-11 70.5 49 71.4
TAR626G1545 Trochodendron aralioides HOM05D001222 ORTHO05D001195 4.2e-11 70.5 49 73.5
vmacro03979 Vaccinium macrocarpon HOM05D001222 ORTHO05D001195 4.2e-11 70.5 49 71.4
Ca_17872_v3 Cicer arietinum L. HOM05D001222 ORTHO05D001195 5.5e-11 70.1 49 69.4
THA.LOC104827737 Tarenaya hassleriana HOM05D001222 ORTHO05D001195 5.5e-11 70.1 49 73.5
Gohir.A06G135300 Gossypium hirsutum HOM05D001222 ORTHO05D001195 7.2e-11 69.7 49 67.3
Gohir.D06G140500 Gossypium hirsutum HOM05D001222 ORTHO05D001195 7.2e-11 69.7 49 67.3
Gorai.010G163900 Gossypium raimondii HOM05D001222 ORTHO05D001195 7.2e-11 69.7 49 67.3
Lsat_1_v5_gn_7_26140 Lactuca sativa HOM05D001222 ORTHO05D001195 7.2e-11 69.7 49 67.3
TPR.G6772 Trifolium pratense HOM05D001222 ORTHO05D001195 7.2e-11 69.7 49 69.4
Aqoxy4G00150 Aquilegia oxysepala HOM05D001222 ORTHO05D001195 9.4e-11 69.3 49 73.5
MELO3C002699.2 Cucumis melo HOM05D001222 ORTHO05D001195 9.4e-11 69.3 49 69.4
MBI02_g43138_MAGBIO Magnolia biondii HOM05D001222 ORTHO05D001195 9.4e-11 69.3 49 75.5
Sed0005183 Sechium edule HOM05D001222 ORTHO05D001195 9.4e-11 69.3 49 71.4
ClCG03G007230 Citrullus lanatus HOM05D001222 ORTHO05D001195 1.2e-10 68.9 49 69.4
Medtr8g087990 Medicago truncatula HOM05D001222 ORTHO05D001195 1.2e-10 68.9 49 69.4
Nn3g20930 Nelumbo nucifera HOM05D001222 ORTHO05D001195 1.6e-10 68.6 49 71.4
Sed0013828 Sechium edule HOM05D001222 ORTHO05D001195 1.6e-10 68.6 49 69.4
unitig_37.g12109 Utricularia gibba HOM05D001222 ORTHO05D001195 1.6e-10 68.6 49 69.4
Aa31LG6G800 Aethionema arabicum HOM05D001222 ORTHO05D001195 2.1e-10 68.2 49 71.4
CARHR224830 Cardamine hirsuta HOM05D001222 ORTHO05D001195 3.6e-10 67.4 49 69.4
PSO541G4347 Papaver somniferum HOM05D001222 ORTHO05D001195 3.6e-10 67.4 49 71.4
PSO675G1498 Papaver somniferum HOM05D001222 ORTHO05D001195 3.6e-10 67.4 49 71.4
PGR031G1512 Punica granatum HOM05D001222 ORTHO05D001195 3.6e-10 67.4 49 65.3
Sc05g0006640 Simmondsia chinensis HOM05D001222 ORTHO05D001195 4.7e-10 67.0 49 67.3
Thhalv10025600m.g Eutrema salsugineum HOM05D001222 ORTHO05D001195 7.9e-10 66.2 49 67.3
Nitab4.5_0001283g0050 Nicotiana tabacum HOM05D001222 ORTHO05D001195 1.4e-09 65.5 49 67.3
Nitab4.5_0003714g0080 Nicotiana tabacum HOM05D001222 ORTHO05D001195 1.4e-09 65.5 49 67.3
Os07g0508300 Oryza sativa ssp. japonica HOM05D001222 ORTHO05D001195 1.4e-09 65.5 49 65.3
AL7G36370 Arabidopsis lyrata HOM05D001222 ORTHO05D001195 1.8e-09 65.1 49 65.3
CAN.G257.56 Capsicum annuum HOM05D001222 ORTHO05D001195 1.8e-09 65.1 49 67.3
Solyc02g071330.4 Solanum lycopersicum HOM05D001222 ORTHO05D001195 1.8e-09 65.1 49 67.3
Sopen02g020390 Solanum pennellii HOM05D001222 ORTHO05D001195 1.8e-09 65.1 49 67.3
Zm00001eb105750 Zea mays HOM05D001222 ORTHO05D001195 1.8e-09 65.1 49 67.3
Zm00001eb307560 Zea mays HOM05D001222 ORTHO05D001195 1.8e-09 65.1 49 67.3
AT4G18060 Arabidopsis thaliana HOM05D001222 ORTHO05D001195 2.3e-09 64.7 49 65.3
AUR62035807 Chenopodium quinoa HOM05D001222 ORTHO05D001195 2.3e-09 64.7 49 63.3
BcaNung06647 Brassica carinata HOM05D001222 ORTHO05D001195 3.0e-09 64.3 49 65.3
C07p49440 Brassica napus HOM05D001222 ORTHO05D001195 3.0e-09 64.3 49 65.3
BolC7t45449H Brassica oleracea HOM05D001222 ORTHO05D001195 3.0e-09 64.3 49 65.3
BraA03t14187Z Brassica rapa HOM05D001222 ORTHO05D001195 3.0e-09 64.3 49 65.3
Carub.0007s2327 Capsella rubella HOM05D001222 ORTHO05D001195 3.0e-09 64.3 49 65.3
EL10Ac8g19802 Beta vulgaris HOM05D001222 ORTHO05D001195 5.1e-09 63.5 49 65.3
Sp7g16070 Schrenkiella parvula HOM05D001222 ORTHO05D001195 5.1e-09 63.5 49 65.3
Ah.09g232970 Amaranthus hybridus HOM05D001222 ORTHO05D001195 8.8e-09 62.8 49 61.2
PGSC0003DMG400003076 Solanum tuberosum HOM05D001222 ORTHO05D001195 1.1e-08 62.4 49 63.3
ECA247G0592 Erigeron canadensis HOM05D004253 ORTHO05D005013 1.5e-08 62.0 49 63.3
Lj4g0000219 Lotus japonicus HOM05D001222 ORTHO05D001195 1.5e-08 62.0 49 65.3
Psat7g191880 Pisum sativum HOM05D001222 ORTHO05D001195 2.0e-08 61.6 40 72.5
HPP92_018434 Vanilla planifolia HOM05D001222 ORTHO05D001195 2.0e-08 61.6 49 59.2
Ah.14g086780 Amaranthus hybridus HOM05D001222 ORTHO05D001195 2.6e-08 61.2 49 63.3
Peaxi162Scf00649g00057 Petunia axillaris HOM05D001222 ORTHO05D001195 2.6e-08 61.2 48 64.6
A03p51020 Brassica napus HOM05D001222 ORTHO05D001195 5.7e-08 60.1 49 61.2
ATR0217G015 Amborella trichopoda HOM05D001222 ORTHO05D001195 1.8e-06 55.1 49 59.2


User provided reference genes

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