Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 1.0e-296 1022.7 546 100.0
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 6.0e-260 900.6 548 88.9
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 6.0e-260 900.6 548 88.9
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.4e-256 889.4 548 88.3
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 6.8e-256 887.1 548 88.0
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.7e-254 881.3 548 87.4
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.7e-222 776.2 557 77.0
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 1.2e-215 753.4 561 74.3
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 2.0e-215 752.7 551 72.6
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 3.8e-214 748.4 541 73.9
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 6.5e-214 747.7 553 72.3
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 2.5e-213 745.7 564 72.5
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 1.6e-212 743.0 564 72.7
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 3.3e-210 735.3 549 72.1
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 2.2e-209 732.6 548 71.7
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 6.3e-209 731.1 561 72.7
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 2.2e-206 722.6 552 73.2
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 5.5e-205 718.0 544 69.7
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.2e-204 716.8 547 72.6
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.6e-204 716.5 552 68.3
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.6e-204 716.5 538 69.5
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 7.9e-204 714.1 552 69.2
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.0e-203 713.8 520 74.2
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 3.0e-203 712.2 564 68.8
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 3.9e-203 711.8 562 69.8
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 5.1e-203 711.4 557 70.2
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 1.1e-202 710.3 554 70.4
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 1.5e-202 709.9 558 69.4
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 2.0e-202 709.5 547 69.5
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 7.4e-202 707.6 550 68.5
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 9.7e-202 707.2 545 69.7
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 1.3e-201 706.8 557 67.5
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.3e-201 706.8 562 70.1
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.3e-201 706.8 550 68.4
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 2.2e-201 706.1 560 68.6
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 8.2e-201 704.1 558 69.0
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 8.2e-201 704.1 559 71.7
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 8.2e-201 704.1 549 68.5
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 1.4e-200 703.4 558 70.1
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 1.8e-200 703.0 541 70.6
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 2.4e-200 702.6 562 69.4
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 4.1e-200 701.8 558 70.1
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 2.0e-199 699.5 549 68.3
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 2.0e-199 699.5 528 71.6
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 1.3e-198 696.8 539 69.0
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 2.9e-198 695.7 542 67.3
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 2.9e-198 695.7 552 67.8
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 3.8e-198 695.3 553 67.1
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 4.7e-196 688.3 544 69.1
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 6.1e-196 688.0 551 67.2
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 6.1e-196 688.0 560 68.2
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 1.8e-195 686.4 552 68.1
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 3.0e-195 685.6 531 68.5
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 3.9e-195 685.3 531 68.7
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 5.2e-195 684.9 552 67.9
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 2.6e-194 682.6 544 67.1
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 3.3e-194 682.2 531 68.2
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 4.4e-194 681.8 530 70.0
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 7.4e-194 681.0 555 64.9
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 1.3e-193 680.2 550 65.8
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 6.3e-193 677.9 549 65.0
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 8.2e-193 677.6 561 67.9
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 7.0e-192 674.5 540 68.0
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 7.0e-192 674.5 550 66.4
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 9.1e-192 674.1 543 65.7
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 2.6e-191 672.5 534 67.4
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 4.5e-191 671.8 550 66.2
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 5.9e-191 671.4 543 66.1
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.0e-190 670.6 552 65.2
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 1.3e-190 670.2 546 67.9
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 1.7e-190 669.8 554 67.5
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 2.9e-190 669.1 550 66.0
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 3.8e-190 668.7 555 65.0
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 1.5e-189 666.8 556 65.5
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 5.5e-189 664.8 563 65.7
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 1.6e-188 663.3 557 67.0
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 2.7e-188 662.5 554 65.3
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 3.6e-188 662.1 469 74.4
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 1.0e-187 660.6 576 63.4
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 6.7e-187 657.9 567 64.4
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 2.6e-186 656.0 547 64.7
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 2.4e-184 649.4 578 61.8
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 4.5e-183 645.2 503 66.2
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 2.9e-182 642.5 559 63.1
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 1.1e-181 640.6 554 63.5
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 5.5e-181 638.3 561 63.1
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 3.0e-179 632.5 607 59.0
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 2.8e-177 625.9 546 61.9
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 4.1e-176 622.1 544 62.9
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 1.6e-175 620.2 575 59.7
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 9.5e-173 610.9 538 62.1
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 5.2e-171 605.1 497 64.6
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 6.8e-171 604.7 563 60.4
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 9.8e-170 600.9 589 59.1
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 8.3e-161 571.2 444 67.1
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 2.7e-151 539.7 590 51.0
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 3.0e-150 536.2 516 61.6
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.1e-136 491.1 495 59.0
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 3.0e-134 483.0 534 55.6
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.2e-130 471.1 400 66.2
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 5.8e-130 468.8 465 54.4
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 7.6e-122 441.8 351 68.7
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 8.7e-118 428.3 462 52.8
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 1.1e-117 427.9 350 66.9
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 6.0e-111 405.6 306 71.2
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 1.3e-110 404.4 331 65.9
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 1.3e-110 404.4 519 44.5
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 5.6e-109 399.1 274 75.2
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 6.2e-108 395.6 305 70.5
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 1.5e-106 391.0 309 68.0
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 2.6e-106 390.2 379 56.5
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 1.9e-104 384.0 309 67.0
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 6.7e-102 375.6 395 55.2
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 1.5e-98 364.4 583 39.8
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 5.5e-96 355.9 349 58.2
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 5.5e-96 355.9 349 58.2
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 4.3e-93 346.3 570 38.8
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 7.7e-90 335.5 271 70.1
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.6e-87 327.8 583 37.0
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 1.5e-77 294.7 271 61.6
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 1.2e-71 275.0 173 81.5
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.9e-56 224.6 512 32.0
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 1.4e-51 208.4 260 50.8
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.5e-50 203.8 217 53.5
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 6.6e-49 199.5 172 64.0
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 3.3e-40 170.6 126 73.0
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 3.4e-37 160.6 451 27.3
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 8.3e-36 156.0 552 27.9
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 1.2e-34 152.1 377 26.3
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 4.7e-31 140.2 88 81.8
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.8e-29 133.3 102 67.6
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.9e-28 131.0 543 25.2
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 1.4e-27 128.6 351 27.9
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 4.6e-26 123.6 86 73.3
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 1.4e-22 112.1 147 46.9
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 8.9e-22 109.4 125 44.0
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 1.3e-20 105.5 520 24.4
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 3.2e-19 100.9 444 23.0
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.1e-16 92.4 125 37.6
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 1.1e-11 75.9 111 50.5
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 9.3e-11 72.8 227 33.0
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.3e-09 68.9 395 23.0
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 2.3e-09 68.2 44 79.5
AagrBONN_evm.TU.Sc2ySwM_362.248 Anthoceros agrestis HOM05D003356 ORTHO05D004362 2.8e-07 61.2 338 26.0
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 2.8e-07 61.2 219 23.7
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 3.6e-07 60.8 250 23.6
vmacro01369 Vaccinium macrocarpon HOM05D005032 ORTHO05D006268 4.8e-07 60.5 218 24.8
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 8.1e-07 59.7 51 56.9
Phvul.003G028700 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 1.8e-06 58.5 219 23.3
Ca_19113_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 3.1e-06 57.8 218 26.6
CiPaw.16G004100 Carya illinoinensis HOM05D005032 ORTHO05D006268 4.0e-06 57.4 217 26.3
AUR62002904 Chenopodium quinoa HOM05D005032 ORTHO05D006268 4.0e-06 57.4 217 26.3
AUR62035263 Chenopodium quinoa HOM05D005032 ORTHO05D006268 4.0e-06 57.4 217 26.3
Pp3c9_13290 Physcomitrium patens HOM05D003356 ORTHO05D004362 5.3e-06 57.0 364 23.4
AagrBONN_evm.TU.Sc2ySwM_369.492 Anthoceros agrestis HOM05D002512 ORTHO05D002660 6.9e-06 56.6 226 23.9
ECA246G3837 Erigeron canadensis HOM05D005032 ORTHO05D006268 6.9e-06 56.6 218 27.5
EL10Ac6g14461 Beta vulgaris HOM05D005032 ORTHO05D006268 9.0e-06 56.2 218 23.4
TWI79G0027 Tripterygium wilfordii HOM05D005032 ORTHO05D006268 9.0e-06 56.2 219 23.3


User provided reference genes

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