Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 6.6e-158 560.8 322 100.0
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.3e-132 476.9 317 79.5
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.1e-132 476.1 317 83.9
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.4e-131 473.4 317 83.3
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.5e-130 469.9 331 76.4
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.7e-129 466.5 331 80.4
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 9.0e-123 444.1 322 82.0
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 5.9e-114 414.8 322 66.1
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.0e-98 363.2 321 59.2
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.9e-96 356.7 321 58.3
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 9.4e-96 354.4 317 59.3
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 6.7e-94 348.2 320 58.1
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.5e-93 347.1 321 57.3
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 8.2e-92 341.3 296 60.5
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 7.0e-91 338.2 318 55.0
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 9.1e-91 337.8 318 55.0
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 2.7e-90 336.3 266 63.5
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 5.9e-90 335.1 317 55.2
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.0e-89 334.3 321 55.1
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.7e-89 333.6 322 56.5
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.1e-88 330.9 318 54.4
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 1.9e-88 330.1 316 54.1
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 3.2e-88 329.3 304 57.9
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 7.2e-88 328.2 323 55.1
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 2.1e-87 326.6 266 63.9
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 2.1e-87 326.6 322 58.4
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.7e-87 326.2 319 61.4
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 8.0e-87 324.7 318 56.3
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 3.0e-86 322.8 324 56.2
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 8.8e-86 321.2 266 63.2
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 2.6e-85 319.7 320 52.8
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 2.6e-85 319.7 319 64.3
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.7e-84 317.0 322 55.0
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 3.7e-84 315.8 321 54.2
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 4.8e-84 315.5 368 51.6
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 1.1e-83 314.3 316 53.2
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.1e-83 314.3 281 56.9
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 3.1e-83 312.8 333 52.0
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 5.4e-83 312.0 259 60.6
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.6e-82 310.5 323 56.0
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.5e-82 309.3 305 56.4
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 5.9e-82 308.5 340 54.1
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 7.7e-82 308.1 318 58.5
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 7.7e-82 308.1 318 54.4
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.0e-81 307.8 327 50.5
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.0e-81 307.8 322 54.7
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 1.0e-81 307.8 321 53.9
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.0e-81 307.8 322 53.1
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 1.7e-81 307.0 327 58.7
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 2.9e-81 306.2 319 59.2
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 3.8e-81 305.8 274 58.4
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 8.5e-81 304.7 322 52.5
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.2e-80 302.8 328 49.7
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 9.4e-80 301.2 334 51.5
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 1.6e-79 300.4 322 51.6
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 3.6e-79 299.3 319 50.5
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 6.1e-79 298.5 325 48.3
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 1.4e-78 297.4 327 51.1
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 1.4e-78 297.4 327 51.1
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 2.3e-78 296.6 317 49.8
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 4.0e-78 295.8 326 49.4
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 5.2e-78 295.4 297 53.2
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 6.8e-78 295.0 324 50.9
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 8.8e-78 294.7 326 50.3
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.2e-77 294.3 327 50.5
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.2e-77 294.3 327 50.5
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.2e-77 294.3 327 50.5
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 1.5e-77 293.9 260 58.5
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.5e-77 293.9 327 48.6
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 2.0e-77 293.5 323 51.1
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.6e-77 293.1 324 47.8
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 3.4e-77 292.7 319 51.1
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 4.4e-77 292.4 327 47.7
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 7.5e-77 291.6 322 50.3
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 9.8e-77 291.2 327 48.6
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.7e-76 290.4 328 49.4
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.7e-76 290.4 328 49.4
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.7e-76 290.4 328 49.4
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.7e-76 290.4 325 52.6
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.8e-76 289.7 315 49.8
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 3.7e-76 289.3 328 49.4
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 3.7e-76 289.3 328 49.4
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 3.7e-76 289.3 318 50.3
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 3.7e-76 289.3 291 52.2
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.9e-76 288.9 327 48.0
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 6.3e-76 288.5 328 49.1
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 6.3e-76 288.5 328 50.0
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 6.3e-76 288.5 327 47.4
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-75 287.7 328 49.7
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.1e-75 287.7 328 49.7
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 7.0e-75 285.0 328 48.8
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 9.2e-75 284.6 272 57.0
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 9.2e-75 284.6 326 50.0
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.2e-74 284.3 324 49.1
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 7.7e-74 281.6 164 87.8
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.0e-73 281.2 295 51.2
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.7e-73 280.4 316 48.1
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 2.3e-73 280.0 316 47.8
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 3.8e-73 279.3 321 49.5
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 5.0e-73 278.9 328 46.6
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 6.6e-73 278.5 264 59.1
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.1e-72 277.7 220 65.9
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 4.3e-72 275.8 388 44.3
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 7.3e-72 275.0 317 47.3
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 7.3e-72 275.0 324 46.0
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 9.5e-72 274.6 321 48.3
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 2.1e-71 273.5 314 47.1
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 2.8e-71 273.1 318 48.1
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.0e-70 271.2 329 45.9
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 1.0e-70 271.2 224 74.6
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.2e-69 267.7 314 46.5
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.2e-69 267.7 329 46.2
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.5e-69 267.3 329 46.2
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 2.0e-69 266.9 315 47.3
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 3.4e-69 266.2 170 84.1
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.4e-69 265.8 327 46.2
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.3e-68 264.2 319 46.7
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.7e-68 262.7 330 46.4
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 1.1e-67 261.2 320 44.1
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 3.2e-67 259.6 321 43.9
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 1.6e-66 257.3 322 45.7
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 5.9e-66 255.4 317 43.8
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.0e-65 254.6 315 45.4
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 2.3e-65 253.4 317 45.4
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.1e-64 251.1 317 43.8
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 2.8e-63 246.5 260 49.2
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 8.0e-63 245.0 318 44.0
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.8e-62 243.8 258 49.6
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 4.0e-62 242.7 416 39.4
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 4.4e-61 239.2 258 48.8
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.2e-58 231.1 320 40.6
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.2e-58 231.1 320 40.6
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 2.7e-58 229.9 320 39.1
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 3.5e-58 229.6 322 40.4
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 5.6e-56 222.2 320 41.6
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 8.3e-52 208.4 317 40.4
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 1.9e-51 207.2 339 40.7
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 5.4e-51 205.7 329 39.5
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 6.9e-38 162.2 223 38.6
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.5e-37 161.0 162 54.9
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 8.4e-36 155.2 215 42.3
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.6e-34 149.4 88 86.4
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.6e-34 149.4 88 86.4
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.6e-32 141.7 102 75.5
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.8e-31 139.4 135 51.9
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.1e-30 138.3 115 63.5
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.4e-30 137.9 135 51.1
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 4.5e-29 132.9 81 77.8
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.7e-25 119.0 88 64.8
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 1.6e-23 114.4 327 28.1
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.1e-23 114.0 149 43.0
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.8e-22 110.9 117 51.3
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 7.6e-21 105.5 320 27.8
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 6.4e-20 102.4 319 26.0
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 1.5e-16 91.3 139 45.3
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 2.5e-16 90.5 117 41.9
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 5.6e-16 89.4 69 58.0
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 5.6e-16 89.4 69 58.0
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 8.1e-15 85.5 80 52.5
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.5e-13 81.3 326 27.0
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 1.8e-09 67.8 144 28.5


User provided reference genes

Program Settings