Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 4.1e-128 461.5 242 100.0
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.9e-118 428.7 242 93.0
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.6e-116 422.9 242 91.7
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.6e-116 422.9 242 91.7
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.2e-115 417.9 228 95.6
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.1e-112 410.2 228 93.4
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 2.3e-99 365.9 240 83.3
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 2.6e-98 362.5 233 82.8
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 4.9e-97 358.2 242 81.8
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 5.6e-77 291.6 246 69.1
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.6e-76 290.0 242 69.4
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 1.6e-76 290.0 239 67.8
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 1.6e-76 290.0 247 65.2
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 3.6e-76 288.9 247 66.4
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 6.2e-76 288.1 248 64.5
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.1e-75 287.3 239 69.9
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 1.1e-75 287.3 246 65.0
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.4e-75 287.0 221 72.9
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 4.0e-75 285.4 240 67.1
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 1.2e-74 283.9 250 64.4
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 1.2e-74 283.9 250 64.4
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.5e-74 283.5 241 66.4
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 2.0e-74 283.1 246 64.2
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.6e-74 282.7 250 64.4
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 5.8e-74 281.6 241 66.0
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.3e-73 280.4 240 66.2
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.7e-73 280.0 248 65.3
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.7e-73 280.0 244 64.8
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.7e-73 280.0 243 65.4
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 3.8e-73 278.9 246 64.6
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 3.8e-73 278.9 240 67.5
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 4.9e-73 278.5 250 64.8
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 6.4e-73 278.1 247 64.8
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.9e-72 276.6 246 63.8
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.9e-72 276.6 208 72.1
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.4e-72 276.2 242 64.5
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 3.2e-72 275.8 250 62.8
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 9.3e-72 274.2 243 63.8
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 9.3e-72 274.2 251 64.5
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.1e-71 273.1 250 63.2
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 3.5e-71 272.3 239 66.9
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 4.6e-71 271.9 244 63.9
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 4.6e-71 271.9 253 61.7
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 7.9e-71 271.2 253 62.5
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 7.9e-71 271.2 253 62.5
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.0e-70 270.8 244 66.4
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 2.3e-70 269.6 244 63.5
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 2.3e-70 269.6 244 65.6
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 3.0e-70 269.2 247 62.8
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 3.9e-70 268.9 238 63.0
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 3.9e-70 268.9 247 62.8
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 3.9e-70 268.9 247 62.8
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 5.1e-70 268.5 246 59.8
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 5.1e-70 268.5 247 62.3
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 5.1e-70 268.5 235 64.3
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 8.7e-70 267.7 251 61.8
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.1e-69 267.3 248 63.3
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.5e-69 266.9 246 64.2
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 2.5e-69 266.2 246 65.0
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 4.3e-69 265.4 251 60.2
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 4.3e-69 265.4 241 63.5
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 9.6e-69 264.2 238 63.4
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.3e-68 263.8 217 68.2
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 2.1e-68 263.1 244 66.8
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 2.1e-68 263.1 246 65.4
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.1e-67 260.8 267 58.4
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.4e-67 260.4 240 62.1
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 1.4e-67 260.4 246 63.0
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.8e-67 260.0 250 62.4
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 5.3e-67 258.5 236 61.4
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 9.0e-67 257.7 206 68.9
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 1.2e-66 257.3 239 61.1
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.2e-66 257.3 246 59.8
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 7.6e-66 254.6 210 66.2
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.7e-65 253.4 210 65.7
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.7e-65 253.4 198 69.7
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 2.2e-65 253.1 201 69.7
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.9e-65 252.7 244 60.2
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.8e-65 252.3 256 59.8
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 6.5e-65 251.5 221 63.3
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 1.1e-64 250.8 253 57.7
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.9e-64 250.0 246 61.0
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 3.2e-64 249.2 246 56.5
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 7.1e-64 248.1 249 60.6
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 7.1e-64 248.1 241 58.1
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 9.3e-64 247.7 210 69.5
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.6e-63 246.9 197 69.5
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 2.1e-63 246.5 249 59.8
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 2.1e-63 246.5 239 61.1
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 3.5e-63 245.7 243 59.7
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 3.5e-63 245.7 209 64.6
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 4.6e-63 245.4 233 63.5
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.8e-62 243.4 241 57.7
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.9e-62 242.3 204 66.7
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 3.9e-62 242.3 239 57.7
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 8.7e-62 241.1 196 66.3
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.1e-61 240.7 242 60.3
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.9e-61 240.0 204 66.2
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 5.7e-61 238.4 204 65.2
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 8.2e-60 234.6 237 58.2
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 2.4e-59 233.0 198 65.7
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 8.4e-57 224.6 228 55.3
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.1e-56 224.2 245 53.5
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 1.8e-54 216.9 198 62.1
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 2.3e-54 216.5 231 55.4
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 3.9e-54 215.7 229 56.8
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 8.7e-54 214.5 223 58.7
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.9e-53 213.4 231 54.5
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 1.9e-53 213.4 235 54.9
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 5.7e-53 211.8 240 53.8
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 9.7e-53 211.1 191 62.8
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 9.7e-53 211.1 230 54.3
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.3e-52 210.7 228 55.7
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.8e-52 209.5 266 50.8
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 3.7e-52 209.1 205 60.0
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 6.3e-52 208.4 176 65.9
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 1.1e-51 207.6 237 53.2
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.1e-51 206.1 200 58.5
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 6.9e-51 204.9 218 54.1
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.2e-50 204.1 267 49.8
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 3.4e-50 202.6 218 53.2
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 5.9e-50 201.8 164 68.3
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 5.9e-50 201.8 164 68.3
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 5.9e-50 201.8 164 68.3
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 5.9e-50 201.8 197 57.9
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 7.7e-50 201.4 234 52.1
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.2e-49 199.9 180 65.0
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 2.2e-49 199.9 200 58.5
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.6e-47 193.7 213 54.5
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 2.7e-47 193.0 162 66.0
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 9.7e-45 184.5 240 47.5
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 2.2e-41 173.3 128 71.1
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 8.5e-41 171.4 200 54.5
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 8.5e-41 171.4 196 53.1
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.5e-40 168.7 189 52.9
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 7.2e-40 168.3 171 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 2.7e-39 166.4 205 51.2
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 5.1e-38 162.2 184 54.3
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.4e-35 154.1 216 45.8
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 7.0e-35 151.8 184 51.6
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 9.1e-35 151.4 157 53.5
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.2e-33 146.7 113 70.8
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.9e-33 146.4 198 48.5
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 5.5e-32 142.1 99 74.7
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 7.2e-32 141.7 193 50.3
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.7e-31 139.0 226 45.6
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.0e-30 136.3 96 77.1
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.2e-23 114.4 89 62.9
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.1e-23 113.6 206 40.8
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 6.8e-22 108.6 96 62.5
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 5.4e-19 99.0 110 50.0
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.0e-14 84.7 113 48.7
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 4.4e-13 79.3 155 43.2
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 9.8e-13 78.2 87 55.2
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 1.3e-12 77.8 87 55.2
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 2.8e-12 76.6 97 45.4
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 1.6e-07 60.8 68 54.4


User provided reference genes

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