Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 1.3e-103 379.8 197 100.0
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 1.4e-102 376.3 197 99.0
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 7.8e-93 344.0 205 90.7
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.3e-89 332.4 198 90.4
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.2e-87 325.9 235 77.9
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 4.1e-78 295.0 205 79.5
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 1.2e-74 283.5 206 74.8
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.6e-74 282.0 147 98.0
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.4e-73 279.3 147 97.3
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 3.1e-73 278.9 207 75.4
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 4.0e-73 278.5 197 75.1
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 6.8e-73 277.7 204 73.0
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.2e-72 276.9 208 74.0
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.2e-72 276.9 208 74.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 2.6e-72 275.8 206 73.8
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 3.4e-72 275.4 207 74.4
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 6.4e-71 271.2 207 73.4
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.1e-70 270.4 201 72.6
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.4e-70 270.0 205 72.7
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.2e-70 268.5 203 72.4
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 7.1e-70 267.7 203 72.4
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 2.1e-69 266.2 204 71.1
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 4.6e-69 265.0 144 90.3
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 7.8e-69 264.2 144 91.0
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.0e-68 263.8 205 70.7
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.0e-68 263.8 205 70.7
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 3.0e-68 262.3 204 69.6
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 3.0e-68 262.3 210 68.6
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 3.9e-68 261.9 205 70.2
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 5.1e-68 261.5 205 69.8
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 5.1e-68 261.5 199 71.9
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 6.6e-68 261.2 204 69.6
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 8.7e-68 260.8 204 70.6
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 4.3e-67 258.5 204 70.1
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 5.6e-67 258.1 206 70.9
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 5.6e-67 258.1 204 69.6
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 7.3e-67 257.7 206 69.9
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 1.6e-66 256.5 210 69.0
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 2.1e-66 256.1 205 70.2
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 2.1e-66 256.1 203 70.0
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 2.8e-66 255.8 202 68.8
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 4.8e-66 255.0 223 65.5
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 4.8e-66 255.0 205 67.8
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 6.2e-66 254.6 205 69.8
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 8.1e-66 254.2 204 69.6
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 8.1e-66 254.2 184 71.7
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.1e-65 253.8 198 69.2
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 2.4e-65 252.7 206 68.4
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 2.4e-65 252.7 211 66.4
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 6.9e-65 251.1 206 67.0
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 6.9e-65 251.1 205 68.8
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.6e-64 249.2 206 68.9
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 4.4e-64 248.4 205 67.8
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 7.6e-64 247.7 205 66.8
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 9.9e-64 247.3 208 67.8
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.2e-63 246.1 208 66.8
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.2e-63 246.1 145 85.5
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 2.9e-63 245.7 145 84.8
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 3.8e-63 245.4 177 71.8
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 8.4e-63 244.2 207 65.7
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.1e-62 243.8 178 73.6
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.1e-62 243.8 178 73.6
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.9e-62 243.0 204 64.7
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 2.4e-62 242.7 197 67.0
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 2.4e-62 242.7 205 67.3
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 2.4e-62 242.7 147 83.0
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 4.2e-62 241.9 209 65.6
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 9.3e-62 240.7 171 73.7
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 9.3e-62 240.7 204 66.7
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.6e-61 240.0 145 82.1
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 2.7e-61 239.2 188 67.6
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 2.7e-61 239.2 197 68.0
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 3.5e-61 238.8 211 62.1
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-61 238.8 196 67.9
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-61 238.8 196 67.9
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 6.0e-61 238.0 185 70.3
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 6.0e-61 238.0 176 68.8
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 6.0e-61 238.0 141 85.1
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 7.8e-61 237.7 144 80.6
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 7.8e-61 237.7 145 80.0
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.0e-60 237.3 182 68.1
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 1.0e-60 237.3 145 82.1
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.0e-60 237.3 211 64.5
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.3e-60 236.9 208 64.4
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.3e-60 236.9 162 75.9
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.7e-60 236.5 146 82.2
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.3e-60 236.1 160 73.1
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.3e-60 236.1 197 67.0
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 3.9e-60 235.3 145 80.7
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 3.9e-60 235.3 182 67.6
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 5.1e-60 235.0 185 69.2
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 5.1e-60 235.0 146 80.8
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 8.7e-60 234.2 148 79.7
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.9e-59 233.0 156 75.0
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 2.5e-59 232.6 177 70.1
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 2.5e-59 232.6 192 66.1
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 2.5e-59 232.6 147 79.6
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.3e-59 232.3 147 80.3
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 4.3e-59 231.9 203 63.5
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 5.6e-59 231.5 147 80.3
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 9.6e-59 230.7 144 77.8
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.3e-58 230.3 210 63.8
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.3e-58 230.3 145 80.0
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.3e-58 230.3 145 77.2
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 4.8e-58 228.4 203 65.0
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 6.2e-58 228.0 213 62.9
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 6.2e-58 228.0 213 62.9
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 6.2e-58 228.0 145 78.6
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 8.1e-58 227.6 144 79.2
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 8.1e-58 227.6 198 62.6
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.4e-57 226.9 165 72.1
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.4e-57 226.9 251 55.8
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 4.0e-57 225.3 144 79.2
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.2e-56 223.8 205 59.5
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.3e-55 220.3 169 69.8
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.3e-55 220.3 169 69.8
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 4.9e-55 218.4 213 60.6
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 6.4e-55 218.0 201 61.2
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 1.1e-54 217.2 157 72.0
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.9e-54 216.5 247 55.9
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.2e-53 213.8 122 86.1
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.7e-53 212.6 174 66.1
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.8e-52 209.9 170 65.9
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 1.8e-52 209.9 143 72.7
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 3.9e-52 208.8 143 71.3
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 5.1e-52 208.4 139 74.1
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 6.7e-52 208.0 189 64.6
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 9.6e-51 204.1 198 61.1
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.3e-50 203.8 147 68.0
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.6e-50 203.4 122 80.3
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 6.2e-50 201.4 229 57.2
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 6.2e-50 201.4 208 57.2
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.0e-47 194.1 157 67.5
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 1.3e-47 193.7 182 59.3
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 8.4e-47 191.0 144 68.8
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.9e-46 189.9 164 65.9
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.5e-46 189.5 159 64.8
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 4.2e-46 188.7 143 67.1
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.2e-45 187.2 172 60.5
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.6e-45 186.8 147 63.9
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.0e-44 184.1 218 51.8
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 5.7e-43 178.3 146 67.1
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.6e-42 176.8 144 63.9
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 3.7e-42 175.6 106 83.0
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 2.6e-40 169.5 106 81.1
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-38 164.1 161 57.8
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 2.1e-37 159.8 96 80.2
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.3e-36 157.1 141 64.5
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.6e-34 150.2 89 84.3
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 8.2e-34 147.9 92 80.4
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 3.8e-31 139.0 82 82.9
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 2.5e-30 136.3 126 62.7
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 6.3e-26 121.7 179 45.3
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.3e-23 114.0 96 60.4
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 2.5e-22 109.8 139 51.8
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.2e-21 107.5 139 42.4
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 2.8e-18 96.3 63 73.0
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 6.5e-15 85.1 157 33.1
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 9.4e-14 81.3 68 63.2
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 1.6e-13 80.5 77 58.4
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 9.1e-09 64.7 180 30.6
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 1.2e-08 64.3 63 57.1
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 3.8e-07 59.3 38 78.9


User provided reference genes

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