Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0082701 Rosa chinensis HOM05D004490 ORTHO05D005353 8.8e-197 690.3 394 100.0
RcHm_v2.0_Chr5g0081671 Rosa chinensis HOM05D004490 ORTHO05D005353 5.4e-146 521.5 440 69.3
FAN21G1156 Fragaria x ananassa HOM05D004490 ORTHO05D005353 2.2e-110 403.3 462 55.8
FAN11G3016 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.7e-102 377.1 470 52.3
FvH4_3g44892 Fragaria vesca HOM05D004490 ORTHO05D005353 1.7e-99 367.1 457 51.9
RcHm_v2.0_Chr4g0398261 Rosa chinensis HOM05D004490 ORTHO05D005353 5.9e-84 315.5 327 56.3
MD04G1003500 Malus domestica HOM05D004490 ORTHO05D005353 7.7e-84 315.1 329 57.8
Prupe.8G058000 Prunus persica HOM05D004490 ORTHO05D005353 1.7e-83 313.9 497 42.5
FAN07G2233 Fragaria x ananassa HOM05D004490 ORTHO05D005353 2.1e-81 307.0 327 55.4
FAN12G1529 Fragaria x ananassa HOM05D004490 ORTHO05D005353 6.1e-81 305.4 327 55.0
FvH4_4g06470 Fragaria vesca HOM05D004490 ORTHO05D005353 8.0e-81 305.1 327 55.0
Manes.02G191800 Manihot esculenta HOM05D004490 ORTHO05D005353 5.2e-80 302.4 326 54.3
MELO3C024104.2 Cucumis melo HOM05D004490 ORTHO05D005353 6.8e-80 302.0 326 54.9
ClCG09G010540 Citrullus lanatus HOM05D004490 ORTHO05D005353 1.5e-79 300.8 327 54.1
Duzib177G0006 Durio zibethinus HOM05D004490 ORTHO05D005353 2.0e-79 300.4 256 67.2
RcHm_v2.0_Chr5g0082081 Rosa chinensis HOM05D004490 ORTHO05D005353 2.0e-79 300.4 186 87.6
arahy.Tifrunner.gnm1.ann1.2Y7GNB Arachis hypogaea HOM05D004490 ORTHO05D005353 3.4e-79 299.7 324 54.3
FAN17G1649 Fragaria x ananassa HOM05D004490 ORTHO05D005353 3.4e-79 299.7 329 54.7
Glyma.10G216200 Glycine max HOM05D004490 ORTHO05D005353 1.3e-78 297.7 332 53.6
Thecc.08G183200 Theobroma cacao HOM05D004490 ORTHO05D005353 2.2e-78 297.0 581 42.7
CsaV3_7G024020 Cucumis sativus L. HOM05D004490 ORTHO05D005353 3.7e-78 296.2 326 53.1
Hma1.2p1_0363F.1_g136660 Hydrangea macrophylla HOM05D004490 ORTHO05D005353 3.7e-78 296.2 327 53.8
Atru.chr12.1269 Acer truncatum HOM05D004490 ORTHO05D005353 4.9e-78 295.8 329 55.6
Cfa018184 Carpinus fangiana HOM05D004490 ORTHO05D005353 1.4e-77 294.3 324 53.7
Ca_10614_v3 Cicer arietinum L. HOM05D004490 ORTHO05D005353 2.4e-77 293.5 323 53.3
GSVIVG01034483001 Vitis vinifera HOM05D004490 ORTHO05D005353 2.4e-77 293.5 329 55.3
MSTRG.1522 Avicennia marina HOM05D004490 ORTHO05D005353 3.1e-77 293.1 326 54.0
TWI63G0531 Tripterygium wilfordii HOM05D004490 ORTHO05D005353 7.0e-77 292.0 326 52.8
EL10Ac1g00080 Beta vulgaris HOM05D004490 ORTHO05D005353 1.2e-76 291.2 329 52.3
SalBow7G0993 Salvia bowleyana HOM05D004490 ORTHO05D005353 1.2e-76 291.2 330 53.6
Cpa.g.sc66.44 Carica papaya HOM05D004490 ORTHO05D005353 1.6e-76 290.8 256 64.1
Ciclev10000724m.g Citrus clementina HOM05D004490 ORTHO05D005353 1.6e-76 290.8 329 53.8
Gohir.D13G125400 Gossypium hirsutum HOM05D004490 ORTHO05D005353 1.6e-76 290.8 329 54.7
Psat6g187400 Pisum sativum HOM05D004490 ORTHO05D005353 2.0e-76 290.4 325 52.9
QL02p033840 Quercus lobata HOM05D004490 ORTHO05D005353 2.0e-76 290.4 324 53.1
Cc10_g11460 Coffea canephora HOM05D004490 ORTHO05D005353 2.7e-76 290.0 327 55.0
Gorai.013G140400 Gossypium raimondii HOM05D004490 ORTHO05D005353 2.7e-76 290.0 329 55.0
Lj5g0002115 Lotus japonicus HOM05D004490 ORTHO05D005353 2.7e-76 290.0 256 62.1
Phvul.007G089700 Phaseolus vulgaris HOM05D004490 ORTHO05D005353 3.5e-76 289.7 329 52.3
SalBow4G3000 Salvia bowleyana HOM05D004490 ORTHO05D005353 3.5e-76 289.7 330 53.3
Lalb_Chr21g0305821 Lupinus albus HOM05D004490 ORTHO05D005353 5.9e-76 288.9 323 52.6
CANSAT64G2929 Cannabis sativa HOM05D004490 ORTHO05D005353 7.8e-76 288.5 330 53.0
CiPaw.16G061300 Carya illinoinensis HOM05D004490 ORTHO05D005353 1.7e-75 287.3 259 62.9
Glyma.20G175700 Glycine max HOM05D004490 ORTHO05D005353 2.3e-75 287.0 329 52.3
Gohir.A13G121400 Gossypium hirsutum HOM05D004490 ORTHO05D005353 2.9e-75 286.6 329 53.8
TPR.G8816 Trifolium pratense HOM05D004490 ORTHO05D005353 2.9e-75 286.6 329 51.7
Lsat_1_v5_gn_5_105541 Lactuca sativa HOM05D004490 ORTHO05D005353 3.8e-75 286.2 479 39.7
Potri.019G083700 Populus trichocarpa HOM05D004490 ORTHO05D005353 1.5e-74 284.3 326 52.5
Ah.05g178090 Amaranthus hybridus HOM05D004490 ORTHO05D005353 2.5e-74 283.5 327 50.8
THA.LOC104816311 Tarenaya hassleriana HOM05D004490 ORTHO05D005353 4.3e-74 282.7 330 51.2
Migut.C01248 Erythranthe guttata HOM05D004490 ORTHO05D005353 5.6e-74 282.3 332 50.9
Carub.0002s1095 Capsella rubella HOM05D004490 ORTHO05D005353 9.5e-74 281.6 332 49.1
HanXRQChr10g0290501 Helianthus annuus HOM05D004490 ORTHO05D005353 1.2e-73 281.2 327 51.1
Oeu021013.3 Olea europaea HOM05D004490 ORTHO05D005353 1.2e-73 281.2 326 51.5
CARHR056930 Cardamine hirsuta HOM05D004490 ORTHO05D005353 1.6e-73 280.8 332 49.1
Aqoxy2G03181 Aquilegia oxysepala HOM05D004490 ORTHO05D005353 2.1e-73 280.4 324 50.6
ECA234G1973 Erigeron canadensis HOM05D004490 ORTHO05D005353 3.6e-73 279.6 327 50.8
DCAR_014360 Daucus carota HOM05D004490 ORTHO05D005353 4.7e-73 279.3 319 51.7
TAR208G0002 Trochodendron aralioides HOM05D004490 ORTHO05D005353 8.0e-73 278.5 330 50.6
arahy.Tifrunner.gnm1.ann1.90XUFN Arachis hypogaea HOM05D004490 ORTHO05D005353 1.4e-72 277.7 320 51.9
Dinv41710 Davidia involucrata HOM05D004490 ORTHO05D005353 1.4e-72 277.7 329 52.6
AL2G20400 Arabidopsis lyrata HOM05D004490 ORTHO05D005353 1.8e-72 277.3 332 48.8
AT1G65280 Arabidopsis thaliana HOM05D004490 ORTHO05D005353 3.0e-72 276.6 332 48.8
Haze_17934 Corylus avellana HOM05D004490 ORTHO05D005353 4.0e-72 276.2 265 61.5
Sabra19G0095100 Salix brachista HOM05D004490 ORTHO05D005353 6.8e-72 275.4 256 61.7
EL10Ac1g00082 Beta vulgaris HOM05D004490 ORTHO05D005353 8.9e-72 275.0 327 50.8
PGR102G0893 Punica granatum HOM05D004490 ORTHO05D005353 2.0e-71 273.9 264 61.7
Eucgr.F04124 Eucalyptus grandis HOM05D004490 ORTHO05D005353 3.4e-71 273.1 365 48.8
Nn5g27710 Nelumbo nucifera HOM05D004490 ORTHO05D005353 4.4e-71 272.7 258 60.5
Lj7A289G25 Lonicera japonica HOM05D004490 ORTHO05D005353 9.8e-71 271.6 339 49.6
Sp6g08010 Schrenkiella parvula HOM05D004490 ORTHO05D005353 4.9e-70 269.2 334 48.5
FvH4_3g44966 Fragaria vesca HOM05D004490 ORTHO05D005353 6.4e-70 268.9 413 46.2
Thhalv10028527m.g Eutrema salsugineum HOM05D004490 ORTHO05D005353 8.3e-70 268.5 333 48.9
SGA_v2.0_scaffold118G32473 Striga asiatica HOM05D004490 ORTHO05D005353 8.3e-70 268.5 312 51.9
Hund27085 Selenicereus undatus HOM05D004490 ORTHO05D005353 1.1e-69 268.1 313 51.1
Medtr1g096410 Medicago truncatula HOM05D004490 ORTHO05D005353 1.4e-69 267.7 326 49.7
A09p29500 Brassica napus HOM05D004490 ORTHO05D005353 2.4e-69 266.9 335 48.1
BraA09t38516Z Brassica rapa HOM05D004490 ORTHO05D005353 2.4e-69 266.9 335 48.1
BcaC04g20957 Brassica carinata HOM05D004490 ORTHO05D005353 9.2e-69 265.0 335 47.8
BolC9t56586H Brassica oleracea HOM05D004490 ORTHO05D005353 9.2e-69 265.0 335 47.8
Sc23g0001210 Simmondsia chinensis HOM05D004490 ORTHO05D005353 1.2e-68 264.6 335 49.3
Solyc11g018670.3 Solanum lycopersicum HOM05D004490 ORTHO05D005353 5.0e-67 259.2 326 49.1
unitig_699.g19825 Utricularia gibba HOM05D004490 ORTHO05D005353 8.6e-67 258.5 325 48.9
VMungo0720G0360 Vigna mungo HOM05D004490 ORTHO05D005353 1.5e-66 257.7 316 50.0
PSO017G7136 Papaver somniferum HOM05D004490 ORTHO05D005353 2.5e-66 256.9 258 55.0
PSO063G0599 Papaver somniferum HOM05D004490 ORTHO05D005353 3.3e-66 256.5 258 55.4
BcaB01g01408 Brassica carinata HOM05D004490 ORTHO05D005353 3.6e-65 253.1 333 46.8
HPP92_020159 Vanilla planifolia HOM05D004490 ORTHO05D005353 8.0e-65 251.9 326 48.2
Sopen11g009650 Solanum pennellii HOM05D004490 ORTHO05D005353 1.1e-64 251.5 326 48.5
Os01g0521500 Oryza sativa ssp. japonica HOM05D004490 ORTHO05D005353 1.2e-63 248.1 322 46.9
CDE08G1471 Ceratophyllum demersum HOM05D004490 ORTHO05D005353 5.8e-63 245.7 327 48.0
vmacro11670 Vaccinium macrocarpon HOM05D004490 ORTHO05D005353 1.1e-61 241.5 494 36.2
Aa31LG9G14890 Aethionema arabicum HOM05D004490 ORTHO05D005353 2.4e-61 240.4 292 50.7
CAN.G905.35 Capsicum annuum HOM05D004490 ORTHO05D005353 2.4e-61 240.4 327 46.5
Nitab4.5_0000277g0020 Nicotiana tabacum HOM05D004490 ORTHO05D005353 5.4e-61 239.2 326 45.1
Prupe.3G081100 Prunus persica HOM05D004490 ORTHO05D005353 7.0e-61 238.8 321 48.9
Peaxi162Scf00848g00115 Petunia axillaris HOM05D004490 ORTHO05D005353 1.6e-60 237.7 326 45.4
Rhsim11G0059700 Rhododendron simsii HOM05D004490 ORTHO05D005353 4.6e-60 236.1 265 55.5
CSS0029963 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 1.0e-59 235.0 328 46.0
AUR62022689 Chenopodium quinoa HOM05D004490 ORTHO05D005353 3.0e-59 233.4 231 57.6
AUR62004649 Chenopodium quinoa HOM05D004490 ORTHO05D005353 5.0e-59 232.6 325 45.8
Zm00001eb427930 Zea mays HOM05D004490 ORTHO05D005353 6.6e-59 232.3 254 51.6
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 2.3e-56 223.8 230 57.4
FAN25G2105 Fragaria x ananassa HOM05D004490 ORTHO05D005353 3.7e-54 216.5 166 74.7
BNapus_Darmor_BZH_scaffold_278p00040 Brassica napus HOM05D004490 ORTHO05D005353 6.4e-54 215.7 227 54.2
ATR1098G081 Amborella trichopoda HOM05D004490 ORTHO05D008312 1.2e-52 211.5 236 52.1
Mapoly0003s0077 Marchantia polymorpha HOM05D004490 ORTHO05D005353 4.4e-47 193.0 303 41.3
Pp3c14_7350 Physcomitrium patens HOM05D004490 ORTHO05D005353 4.4e-47 193.0 287 44.6
CBR_g58400 Chara braunii HOM05D004490 ORTHO05D005353 1.0e-43 181.8 268 43.3
CSS0027711 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 1.7e-43 181.0 186 55.4
Hma1.2p1_0363F.1_g136650 Hydrangea macrophylla HOM05D004490 ORTHO05D005353 3.0e-43 180.3 227 48.5
AUR62022497 Chenopodium quinoa HOM05D004490 ORTHO05D005353 3.9e-43 179.9 188 56.9
SHI09004 Sapria himalayana HOM05D004490 ORTHO05D005353 8.7e-43 178.7 347 38.6
CSS0045593 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 1.9e-42 177.6 221 50.2
SHI54375 Sapria himalayana HOM05D004490 ORTHO05D005353 2.4e-40 170.6 266 44.0
SEGI_05919 Sequoiadendron giganteum HOM05D004490 ORTHO05D005353 5.8e-39 166.0 192 53.1
Gorai.012G182200 Gossypium raimondii HOM05D004490 ORTHO05D005353 2.2e-38 164.1 240 49.2
CDE02G3308 Ceratophyllum demersum HOM05D004490 ORTHO05D005353 1.4e-37 161.4 161 57.1
FvH4_3g44960 Fragaria vesca HOM05D004490 ORTHO05D005353 1.4e-37 161.4 110 84.5
AagrBONN_evm.TU.Sc2ySwM_228.3521 Anthoceros agrestis HOM05D004490 ORTHO05D005353 1.3e-35 154.8 289 39.1
FAN25G1655 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.3e-35 154.8 281 39.9
SHI41020 Sapria himalayana HOM05D004490 ORTHO05D005353 4.0e-32 143.3 166 52.4
FAN11G0711 Fragaria x ananassa HOM05D004490 ORTHO05D005353 2.2e-30 137.5 115 67.0
Gohir.A04G142550 Gossypium hirsutum HOM05D004490 ORTHO05D005353 8.7e-27 125.6 240 40.8
PGSC0003DMG400016394 Solanum tuberosum HOM05D004490 ORTHO05D002367 1.4e-24 118.2 233 38.6
Gohir.D04G186001 Gossypium hirsutum HOM05D004490 ORTHO05D005353 4.0e-24 116.7 172 47.7
TAR630G0004 Trochodendron aralioides HOM05D004490 ORTHO05D005353 5.3e-24 116.3 118 60.2
FAN11G3432 Fragaria x ananassa HOM05D004490 ORTHO05D005353 2.6e-23 114.0 219 40.2
PRCOL_00002362 Prasinoderma coloniale HOM05D004490 ORTHO05D005353 4.5e-23 113.2 271 36.2
TAR622G0885 Trochodendron aralioides HOM05D004490 ORTHO05D005353 1.3e-22 111.7 115 58.3
Nitab4.5_0002074g0010 Nicotiana tabacum HOM05D004490 ORTHO05D005353 4.9e-22 109.8 174 41.4
Sed0010515 Sechium edule HOM05D004490 ORTHO05D005353 6.4e-22 109.4 174 42.0
Sopen01g003870 Solanum pennellii HOM05D004490 ORTHO05D005353 1.9e-21 107.8 229 35.8
FvH4_3g44931 Fragaria vesca HOM05D004490 ORTHO05D005353 1.8e-19 101.3 62 80.6
FvH4_3g44932 Fragaria vesca HOM05D004490 ORTHO05D005353 2.1e-12 77.8 63 71.4
Cpa.g.sc66.45 Carica papaya HOM05D004490 ORTHO05D005353 4.6e-12 76.6 61 55.7
Actinidia03513 Actinidia chinensis HOM05D004490 ORTHO05D005353 2.3e-11 74.3 74 55.4
SalBow7G1708 Salvia bowleyana HOM05D004490 ORTHO05D005353 5.1e-11 73.2 76 53.9
Oeu039613.1 Olea europaea HOM05D004490 ORTHO05D005353 4.3e-10 70.1 82 48.8
SalBow7G4042 Salvia bowleyana HOM05D004490 ORTHO05D005353 5.7e-10 69.7 76 52.6
CiPaw.15G081800 Carya illinoinensis HOM05D004490 ORTHO05D005353 1.3e-09 68.6 60 51.7
BNapus_Darmor_BZH_scaffold_278p00030 Brassica napus HOM05D004490 ORTHO05D005353 2.2e-09 67.8 61 54.1
MCO12G010 Micromonas commoda HOM05D004490 ORTHO05D005353 2.2e-09 67.8 328 27.4
CDE02G2953 Ceratophyllum demersum HOM05D004490 ORTHO05D005353 1.4e-08 65.1 66 48.5
Nitab4.5_0018466g0010 Nicotiana tabacum HOM05D004490 ORTHO05D005353 1.8e-08 64.7 69 49.3
HPP92_020178 Vanilla planifolia HOM05D004490 ORTHO05D005353 1.8e-08 64.7 73 45.2
SEGI_30950 Sequoiadendron giganteum HOM05D023998 ORTHO05D005353 4.1e-08 63.5 99 46.5
SEGI_26294 Sequoiadendron giganteum HOM05D004490 ORTHO05D005353 7.7e-07 59.3 81 37.0
vmacro00772 Vaccinium macrocarpon HOM05D004490 ORTHO05D005353 7.7e-07 59.3 79 46.8


User provided reference genes

Program Settings