Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 3.4e-35 151.0 70 100.0
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 1.6e-32 142.1 70 94.3
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.7e-29 132.1 63 92.1
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.7e-29 132.1 63 92.1
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 3.7e-29 131.0 63 90.5
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 6.3e-29 130.2 63 92.1
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 1.5e-27 125.6 63 90.5
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 1.1e-25 119.4 63 79.4
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 1.9e-25 118.6 63 81.0
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 3.2e-25 117.9 63 82.5
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 3.2e-25 117.9 70 72.9
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 4.2e-25 117.5 63 82.5
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 5.5e-25 117.1 63 79.4
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 5.5e-25 117.1 63 79.4
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 7.2e-25 116.7 63 77.8
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 7.2e-25 116.7 63 79.4
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 1.2e-24 115.9 64 79.7
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.2e-24 115.9 65 75.4
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 1.2e-24 115.9 65 75.4
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 1.6e-24 115.5 63 79.4
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 1.6e-24 115.5 66 75.8
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.6e-24 115.5 63 79.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.1e-24 115.2 63 74.6
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 2.1e-24 115.2 63 77.8
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 2.7e-24 114.8 63 77.8
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 2.7e-24 114.8 63 77.8
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 2.7e-24 114.8 63 77.8
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 2.7e-24 114.8 63 77.8
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 2.7e-24 114.8 63 76.2
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 2.7e-24 114.8 63 77.8
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 3.6e-24 114.4 63 77.8
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.7e-24 114.0 63 77.8
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 4.7e-24 114.0 63 76.2
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 7.9e-24 113.2 63 77.8
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 7.9e-24 113.2 63 76.2
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.0e-23 112.8 63 74.6
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.0e-23 112.8 63 76.2
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.0e-23 112.8 63 76.2
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.0e-23 112.8 63 74.6
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.0e-23 112.8 63 77.8
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.0e-23 112.8 63 77.8
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.0e-23 112.8 63 77.8
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.4e-23 112.5 63 76.2
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 1.4e-23 112.5 63 76.2
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 1.8e-23 112.1 63 76.2
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 1.8e-23 112.1 63 76.2
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 2.3e-23 111.7 63 74.6
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 2.3e-23 111.7 63 76.2
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 2.3e-23 111.7 63 74.6
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 2.3e-23 111.7 63 74.6
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.3e-23 111.7 64 75.0
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 3.0e-23 111.3 66 68.2
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 3.0e-23 111.3 63 74.6
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 3.0e-23 111.3 63 74.6
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 3.0e-23 111.3 63 74.6
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 3.0e-23 111.3 63 74.6
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 3.9e-23 110.9 63 73.0
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 5.1e-23 110.5 63 74.6
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 6.7e-23 110.2 63 76.2
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 8.8e-23 109.8 63 74.6
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 8.8e-23 109.8 63 76.2
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 8.8e-23 109.8 63 74.6
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 1.1e-22 109.4 63 76.2
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 1.1e-22 109.4 63 76.2
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.5e-22 109.0 63 73.0
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.5e-22 109.0 63 74.6
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.5e-22 109.0 63 71.4
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 2.0e-22 108.6 68 69.1
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 2.0e-22 108.6 63 69.8
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 2.6e-22 108.2 64 70.3
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 4.4e-22 107.5 63 73.0
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 4.4e-22 107.5 63 73.0
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 5.7e-22 107.1 63 71.4
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 5.7e-22 107.1 63 73.0
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 5.7e-22 107.1 63 74.6
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 1.3e-21 105.9 63 73.0
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 1.3e-21 105.9 66 65.2
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.3e-21 105.9 63 69.8
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.7e-21 105.5 63 71.4
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.7e-21 105.5 63 71.4
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 1.7e-21 105.5 63 71.4
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 2.2e-21 105.1 63 68.3
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 2.2e-21 105.1 63 71.4
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 2.8e-21 104.8 63 66.7
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.8e-21 104.8 63 71.4
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.8e-21 104.8 63 71.4
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 2.8e-21 104.8 63 68.3
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 4.8e-21 104.0 63 66.7
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 4.8e-21 104.0 63 66.7
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 4.8e-21 104.0 63 66.7
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 4.8e-21 104.0 63 66.7
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 4.8e-21 104.0 63 73.0
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 6.3e-21 103.6 63 71.4
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 6.3e-21 103.6 63 71.4
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 6.3e-21 103.6 63 69.8
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 8.2e-21 103.2 63 66.7
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 8.2e-21 103.2 63 69.8
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.1e-20 102.8 63 69.8
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 1.4e-20 102.4 64 70.3
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 1.8e-20 102.1 65 63.1
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 1.8e-20 102.1 65 63.1
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.8e-20 102.1 65 63.1
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 1.8e-20 102.1 65 63.1
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 2.4e-20 101.7 63 69.8
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 3.1e-20 101.3 63 65.1
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 3.1e-20 101.3 63 65.1
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 3.1e-20 101.3 62 64.5
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 4.1e-20 100.9 67 64.2
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 4.1e-20 100.9 67 64.2
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 5.3e-20 100.5 64 64.1
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 9.1e-20 99.8 85 57.6
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 2.0e-19 98.6 63 65.1
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 2.6e-19 98.2 66 60.6
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 2.6e-19 98.2 63 66.7
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 1.7e-18 95.5 63 58.7
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 1.7e-18 95.5 63 58.7
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 1.1e-17 92.8 68 60.3
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.1e-17 92.8 51 76.5
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 2.5e-17 91.7 63 61.9
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 4.2e-17 90.9 64 59.4
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 9.4e-17 89.7 61 62.3
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 9.7e-14 79.7 61 52.5
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 9.7e-14 79.7 51 62.7
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 7.0e-12 73.6 65 49.2
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 2.0e-11 72.0 39 76.9
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 1.5e-09 65.9 64 46.9
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 3.2e-09 64.7 53 52.8
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 5.5e-09 63.9 60 48.3
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 9.4e-09 63.2 29 86.2
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 8.0e-08 60.1 40 60.0
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 2.3e-07 58.5 32 71.9
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 4.0e-07 57.8 64 46.9
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.3e-06 54.7 34 61.8


User provided reference genes

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