Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0081251 Rosa chinensis HOM05D000870 ORTHO05D348084 2.8e-32 141.4 72 100.0
RcHm_v2.0_Chr5g0081261 Rosa chinensis HOM05D000870 ORTHO05D000715 1.8e-26 122.1 67 86.6
FAN16G3408 Fragaria x ananassa HOM05D000870 ORTHO05D000715 9.6e-25 116.3 67 82.1
FvH4_3g44550 Fragaria vesca HOM05D000870 ORTHO05D000715 2.1e-24 115.2 67 80.6
FAN17G1641 Fragaria x ananassa HOM05D000870 ORTHO05D000715 2.1e-24 115.2 67 82.1
FAN11G1396 Fragaria x ananassa HOM05D000870 ORTHO05D000715 2.8e-24 114.8 67 82.1
FAN21G0670 Fragaria x ananassa HOM05D000870 ORTHO05D000715 4.8e-24 114.0 67 83.6
FAN25G0962 Fragaria x ananassa HOM05D000870 ORTHO05D000715 5.8e-22 107.1 69 79.7
MD11G1014600 Malus domestica HOM05D000870 ORTHO05D000715 2.2e-16 88.6 68 64.7
Prupe.6G012100 Prunus persica HOM05D000870 ORTHO05D000715 1.1e-15 86.3 69 62.3
MD03G1011700 Malus domestica HOM05D000870 ORTHO05D000715 9.0e-15 83.2 72 62.5
Potri.001G010200 Populus trichocarpa HOM05D000870 ORTHO05D000715 2.3e-10 68.6 68 52.9
Duzib170G0097 Durio zibethinus HOM05D000870 ORTHO05D000715 8.8e-10 66.6 69 50.7
Potri.001G010000 Populus trichocarpa HOM05D000870 ORTHO05D000715 1.5e-09 65.9 68 51.5
Oeu040304.1 Olea europaea HOM05D000870 ORTHO05D000715 2.0e-09 65.5 55 56.4
Migut.N00612 Erythranthe guttata HOM05D000870 ORTHO05D000715 3.3e-09 64.7 53 58.5
Sabra01G0008000 Salix brachista HOM05D000870 ORTHO05D000715 5.7e-09 63.9 68 51.5
Gorai.013G248400 Gossypium raimondii HOM05D000870 ORTHO05D000715 7.4e-09 63.5 65 52.3
Gohir.D13G217800 Gossypium hirsutum HOM05D000870 ORTHO05D000715 9.7e-09 63.2 65 52.3
MSTRG.12782 Avicennia marina HOM05D000870 ORTHO05D000715 1.3e-08 62.8 53 58.5
Gohir.A13G214000 Gossypium hirsutum HOM05D000870 ORTHO05D000715 2.2e-08 62.0 65 50.8
Duzib150G0829 Durio zibethinus HOM05D000870 ORTHO05D000715 2.8e-08 61.6 69 46.4
SalBow3G3649 Salvia bowleyana HOM05D000870 ORTHO05D000715 3.7e-08 61.2 70 54.3
COL.COLO4_10446 Corchorus olitorius HOM05D000870 ORTHO05D000715 4.8e-08 60.8 62 51.6
ATR0598G177 Amborella trichopoda HOM05D000870 ORTHO05D000715 8.2e-08 60.1 60 51.7
GSVIVG01025383001 Vitis vinifera HOM05D000870 ORTHO05D000715 8.2e-08 60.1 49 55.1
PGR102G1385 Punica granatum HOM05D000870 ORTHO05D000715 1.4e-07 59.3 67 52.2
Thecc.09G215600 Theobroma cacao HOM05D000870 ORTHO05D000715 1.8e-07 58.9 69 46.4
Actinidia06859 Actinidia chinensis HOM05D000870 ORTHO05D000715 2.4e-07 58.5 54 50.0
QL09p016503 Quercus lobata HOM05D000870 ORTHO05D000715 2.4e-07 58.5 64 46.9
QL04p091101 Quercus lobata HOM05D000870 ORTHO05D000715 3.1e-07 58.2 64 46.9
Rhsim13G0228300 Rhododendron simsii HOM05D000870 ORTHO05D000715 4.1e-07 57.8 53 52.8
SGA_v2.0_scaffold3G01652 Striga asiatica HOM05D000870 ORTHO05D000715 4.1e-07 57.8 65 52.3
Lju857A2T20 Lonicera japonica HOM05D000870 ORTHO05D000715 5.3e-07 57.4 62 48.4
DCAR_024362 Daucus carota HOM05D000870 ORTHO05D000715 1.2e-06 56.2 76 44.7
Lj1A1133T45 Lonicera japonica HOM05D000870 ORTHO05D000715 1.2e-06 56.2 64 46.9
Manes.15G105000 Manihot esculenta HOM05D000870 ORTHO05D000715 1.2e-06 56.2 68 50.0
QL01p010249 Quercus lobata HOM05D000870 ORTHO05D000715 1.2e-06 56.2 66 47.0
Dinv34737 Davidia involucrata HOM05D000870 ORTHO05D000715 1.5e-06 55.8 73 42.5
Dinv36335 Davidia involucrata HOM05D000870 ORTHO05D000715 1.5e-06 55.8 73 42.5
CSS0042503 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 2.6e-06 55.1 54 48.1
Rhsim03G0003100 Rhododendron simsii HOM05D000870 ORTHO05D000715 2.6e-06 55.1 59 45.8
Actinidia22068 Actinidia chinensis HOM05D000870 ORTHO05D000715 3.4e-06 54.7 58 48.3
CsaV3_1G042260 Cucumis sativus L. HOM05D000870 ORTHO05D000715 3.4e-06 54.7 58 53.4
CANSAT11G0728 Cannabis sativa HOM05D000870 ORTHO05D000715 4.5e-06 54.3 77 46.8
Sed0005782 Sechium edule HOM05D000870 ORTHO05D000715 4.5e-06 54.3 67 47.8
TWI34G0364 Tripterygium wilfordii HOM05D000870 ORTHO05D000715 4.5e-06 54.3 79 43.0
vmacro22624 Vaccinium macrocarpon HOM05D000870 ORTHO05D000715 4.5e-06 54.3 59 45.8
ClCG03G013960 Citrullus lanatus HOM05D000870 ORTHO05D000715 5.9e-06 53.9 73 49.3
Sc06g0008000 Simmondsia chinensis HOM05D000870 ORTHO05D000715 5.9e-06 53.9 62 48.4
Cpa.g.sc119.95 Carica papaya HOM05D000870 ORTHO05D000715 7.7e-06 53.5 47 57.4
MELO3C015651.2 Cucumis melo HOM05D000870 ORTHO05D000715 7.7e-06 53.5 73 49.3
PSO384G5112 Papaver somniferum HOM05D000870 ORTHO05D000715 7.7e-06 53.5 62 43.5


User provided reference genes

Program Settings