Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 9.6e-131 470.3 262 100.0
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 1.4e-126 456.4 262 97.7
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.4e-113 413.3 262 88.9
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 9.9e-112 407.1 262 88.5
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.0e-104 382.9 223 93.3
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 5.5e-94 348.2 260 78.5
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 1.1e-91 340.5 259 75.7
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 4.5e-80 302.0 266 68.8
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 8.0e-77 291.2 272 68.4
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.0e-76 290.8 240 67.9
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 7.4e-75 284.6 257 63.4
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 1.3e-74 283.9 220 68.6
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.3e-74 283.9 260 64.6
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 2.8e-74 282.7 263 63.9
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 4.8e-74 282.0 255 67.8
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 8.2e-74 281.2 262 62.6
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.1e-73 280.8 263 66.2
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.8e-73 280.0 259 64.1
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 3.1e-73 279.3 219 70.3
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 2.6e-72 276.2 226 67.7
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 3.5e-72 275.8 238 64.7
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 4.5e-72 275.4 263 65.4
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.0e-71 274.2 220 68.6
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 1.0e-71 274.2 251 62.2
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 2.2e-71 273.1 251 61.8
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 2.2e-71 273.1 263 65.0
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.9e-71 272.7 254 65.4
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 6.5e-71 271.6 259 61.0
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 3.2e-70 269.2 234 65.4
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 4.2e-70 268.9 228 67.1
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 2.1e-69 266.5 240 66.7
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 3.6e-69 265.8 260 61.2
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 4.7e-69 265.4 255 63.9
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 8.0e-69 264.6 229 66.4
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 3.0e-68 262.7 252 61.1
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 4.0e-68 262.3 228 65.4
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 5.2e-68 261.9 243 61.7
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 1.5e-67 260.4 260 61.2
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 2.0e-67 260.0 265 61.1
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 2.0e-67 260.0 228 64.5
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 2.6e-67 259.6 259 58.7
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 4.4e-67 258.8 260 58.8
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 4.4e-67 258.8 250 64.4
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 7.5e-67 258.1 223 64.6
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 1.3e-66 257.3 225 64.4
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 1.7e-66 256.9 261 60.2
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 1.7e-66 256.9 227 65.6
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 2.2e-66 256.5 231 63.6
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 3.7e-66 255.8 232 63.4
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 4.8e-66 255.4 260 59.2
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.1e-65 254.2 222 66.2
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 1.1e-65 254.2 284 56.3
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 2.4e-65 253.1 250 58.4
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 3.1e-65 252.7 260 58.5
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 4.1e-65 252.3 231 62.8
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 1.7e-63 246.9 264 59.1
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.2e-63 246.5 290 60.0
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 2.9e-63 246.1 235 65.1
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 6.5e-63 245.0 264 57.6
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 1.1e-62 244.2 262 55.3
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 1.9e-62 243.4 216 65.3
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 1.9e-62 243.4 255 56.9
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 4.2e-62 242.3 264 57.2
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 4.2e-62 242.3 256 59.0
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 2.1e-61 240.0 197 66.5
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 1.4e-60 237.3 266 58.3
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 2.3e-60 236.5 232 60.8
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 4.0e-60 235.7 237 59.1
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 8.8e-60 234.6 254 57.5
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 8.8e-60 234.6 260 54.6
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.2e-59 234.2 252 57.9
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 2.0e-59 233.4 232 60.8
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 4.4e-59 232.3 274 55.8
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 1.7e-58 230.3 235 58.3
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 1.7e-58 230.3 235 58.3
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 3.7e-58 229.2 263 56.3
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 6.3e-58 228.4 231 61.9
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 1.1e-57 227.6 135 89.6
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 4.1e-57 225.7 236 57.6
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 7.0e-57 224.9 262 55.7
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 7.0e-57 224.9 187 69.0
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 4.5e-56 222.2 225 56.0
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 4.5e-56 222.2 164 76.2
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 1.7e-55 220.3 264 54.9
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 1.7e-55 220.3 236 56.4
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 2.9e-55 219.5 214 59.3
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 2.9e-55 219.5 214 59.3
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 2.9e-55 219.5 214 59.3
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 5.0e-55 218.8 221 59.7
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 1.5e-54 217.2 250 54.4
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 1.9e-54 216.9 252 54.8
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 5.5e-54 215.3 239 55.6
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 9.5e-54 214.5 215 57.7
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 6.1e-53 211.8 261 54.0
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 4.0e-52 209.1 224 56.7
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 1.5e-51 207.2 249 53.4
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 2.0e-51 206.8 221 55.2
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 2.0e-51 206.8 260 50.8
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 2.6e-51 206.5 222 56.3
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 5.7e-51 205.3 248 53.2
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.3e-50 204.1 258 52.3
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.7e-50 203.8 202 55.4
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.7e-50 203.8 264 47.7
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 2.2e-50 203.4 202 55.4
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.2e-50 203.4 183 60.7
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 6.3e-50 201.8 248 52.4
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 2.4e-49 199.9 226 52.7
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 2.7e-48 196.4 144 72.2
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 2.9e-47 193.0 211 55.5
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 5.0e-47 192.2 231 53.2
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 6.6e-47 191.8 264 52.3
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 3.3e-46 189.5 176 60.8
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 7.3e-46 188.3 243 49.0
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.6e-45 187.2 234 51.3
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 3.6e-45 186.0 227 49.8
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 8.0e-45 184.9 236 47.0
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 1.8e-44 183.7 221 49.8
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 4.0e-44 182.6 171 59.1
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 2.0e-43 180.3 148 68.9
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 4.4e-43 179.1 260 50.0
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 1.7e-42 177.2 220 52.3
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 2.2e-42 176.8 235 47.7
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 6.4e-42 175.3 178 57.9
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 1.1e-41 174.5 120 75.8
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 1.6e-40 170.6 190 54.2
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 5.0e-39 165.6 189 55.0
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 2.9e-34 149.8 156 53.8
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 3.7e-34 149.4 261 43.3
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 6.4e-34 148.7 148 52.0
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 1.4e-33 147.5 155 59.4
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 5.1e-31 139.0 133 58.6
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 2.5e-30 136.7 111 65.8
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 7.6e-27 125.2 104 62.5
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 3.3e-22 109.8 112 53.6
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 4.3e-22 109.4 260 35.0
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 5.8e-19 99.0 125 52.8
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 7.6e-19 98.6 168 41.1
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 2.9e-18 96.7 235 31.5
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.9e-18 95.9 100 57.0
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 5.4e-17 92.4 66 74.2
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 2.7e-16 90.1 202 33.2
FvH4_3g30180 Fragaria vesca HOM05D002282 ORTHO05D045693 6.6e-15 85.5 86 70.9
FAN11G2064 Fragaria x ananassa HOM05D002282 ORTHO05D045693 6.6e-15 85.5 86 70.9
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 1.9e-14 84.0 62 80.6
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 2.4e-12 77.0 238 30.3
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 2.4e-12 77.0 62 59.7
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 2.2e-10 70.5 231 30.3
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 3.8e-10 69.7 195 29.7
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 1.6e-08 64.3 88 50.0
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 1.0e-07 61.6 202 30.2
PRCOL_00005222 Prasinoderma coloniale HOM05D002282 ORTHO05D002403 8.7e-07 58.5 115 32.2
ClCG06G004860 Citrullus lanatus HOM05D002282 ORTHO05D002403 2.5e-06 57.0 89 40.4
TPR.G4827 Trifolium pratense HOM05D002282 ORTHO05D002403 4.3e-06 56.2 135 32.6
arahy.Tifrunner.gnm1.ann1.3PI56D Arachis hypogaea HOM05D002282 ORTHO05D002403 5.6e-06 55.8 205 25.9
Sed0017061 Sechium edule HOM05D002282 ORTHO05D002403 5.6e-06 55.8 142 35.9
CsaV3_6G022650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 7.3e-06 55.5 89 38.2
GSVIVG01035079001 Vitis vinifera HOM05D002282 ORTHO05D002403 9.6e-06 55.1 135 31.1


User provided reference genes

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