Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 5.3e-125 451.1 230 100.0
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 3.4e-116 421.8 230 94.8
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.7e-115 419.5 230 94.3
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.2e-115 419.1 230 93.9
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.8e-115 418.3 230 93.9
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.9e-114 416.0 230 93.9
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 5.0e-107 391.3 230 86.5
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 3.0e-104 382.1 230 84.8
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.1e-103 380.2 231 82.3
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 6.3e-102 374.4 230 83.0
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 2.4e-101 372.5 230 82.2
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 5.3e-101 371.3 230 81.3
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 8.5e-99 364.0 229 79.5
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 9.4e-98 360.5 229 79.5
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 1.2e-97 360.1 229 80.3
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.0e-96 357.1 218 80.3
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 1.4e-96 356.7 229 78.2
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.4e-96 356.7 230 77.4
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 2.3e-96 355.9 254 74.8
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 3.9e-96 355.1 230 80.0
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 6.7e-96 354.4 230 79.6
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 6.7e-96 354.4 228 77.2
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 6.7e-96 354.4 230 78.7
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.0e-95 352.8 230 78.3
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.0e-95 352.8 230 78.3
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 2.6e-95 352.4 230 76.5
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 3.3e-95 352.1 218 82.1
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 3.3e-95 352.1 230 78.3
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 4.4e-95 351.7 230 77.4
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 5.7e-95 351.3 230 78.3
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.1e-93 347.1 226 76.5
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 1.4e-93 346.7 230 77.4
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 1.8e-93 346.3 233 76.8
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 7.0e-93 344.4 226 77.0
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.2e-92 343.6 223 77.1
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.0e-91 340.5 223 75.8
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.3e-91 340.1 230 74.8
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 6.5e-91 337.8 230 74.8
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.1e-90 337.0 230 73.5
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 1.4e-90 336.7 219 76.3
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.9e-90 336.3 229 70.7
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 1.9e-90 336.3 232 72.8
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.9e-90 336.3 223 76.7
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.9e-90 336.3 222 74.8
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.5e-90 335.9 229 71.6
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 3.2e-90 335.5 224 75.4
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 3.2e-90 335.5 228 73.7
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 4.2e-90 335.1 229 71.6
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 4.2e-90 335.1 229 72.9
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 5.5e-90 334.7 225 68.4
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 5.5e-90 334.7 230 72.2
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 7.2e-90 334.3 229 70.7
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 1.2e-89 333.6 229 71.2
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 1.2e-89 333.6 229 70.7
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 1.2e-89 333.6 229 72.5
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 1.6e-89 333.2 229 71.2
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 1.6e-89 333.2 219 74.9
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 2.1e-89 332.8 228 71.5
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.6e-89 332.0 230 75.7
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 3.6e-89 332.0 232 69.0
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 3.6e-89 332.0 232 69.0
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 3.6e-89 332.0 232 69.0
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 4.7e-89 331.6 229 72.1
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 4.7e-89 331.6 229 72.1
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 6.1e-89 331.3 229 70.3
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 6.1e-89 331.3 230 71.3
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 6.1e-89 331.3 233 73.0
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 6.1e-89 331.3 228 72.8
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 8.0e-89 330.9 224 74.6
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 8.0e-89 330.9 224 74.6
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 8.0e-89 330.9 226 72.1
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 8.0e-89 330.9 231 72.7
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 1.0e-88 330.5 224 73.7
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 1.4e-88 330.1 229 69.4
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 1.4e-88 330.1 230 72.2
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 1.4e-88 330.1 230 72.2
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 1.8e-88 329.7 229 70.3
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.8e-88 329.7 230 75.2
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 6.7e-88 327.8 226 70.4
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.5e-87 326.6 331 57.1
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 1.5e-87 326.6 233 71.2
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 2.0e-87 326.2 230 70.9
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 5.7e-87 324.7 223 72.2
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 7.4e-87 324.3 224 74.6
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.7e-86 323.2 230 74.3
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 2.8e-86 322.4 227 69.2
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 3.7e-86 322.0 226 71.2
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 3.7e-86 322.0 216 69.9
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 4.8e-86 321.6 224 69.6
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.8e-85 319.7 229 71.6
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 1.8e-85 319.7 229 70.3
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.8e-85 319.7 229 68.1
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 3.1e-85 318.9 230 71.3
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 7.0e-85 317.8 229 67.7
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 2.0e-84 316.2 230 70.0
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 3.5e-84 315.5 226 70.8
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 2.9e-83 312.4 224 69.2
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 5.0e-83 311.6 224 67.0
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 9.4e-82 307.4 224 66.5
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 9.4e-82 307.4 230 67.4
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 6.1e-81 304.7 223 67.7
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 6.1e-81 304.7 223 66.4
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 8.0e-81 304.3 223 67.7
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 6.7e-80 301.2 231 65.8
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 6.7e-80 301.2 223 66.8
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 8.8e-80 300.8 223 67.7
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.2e-79 300.4 223 66.8
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 4.4e-79 298.5 224 65.2
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 7.5e-79 297.7 223 66.8
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.7e-78 296.6 223 67.3
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.7e-78 296.6 308 53.2
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 6.3e-78 294.7 225 64.4
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.1e-77 293.9 362 49.4
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 5.9e-76 288.1 224 63.4
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 7.7e-76 287.7 229 66.4
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 6.5e-75 284.6 228 61.8
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 3.6e-73 278.9 229 65.1
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 1.5e-71 273.5 225 61.3
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 2.0e-71 273.1 224 61.2
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 2.6e-71 272.7 224 58.9
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.3e-70 270.4 178 75.8
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 3.7e-70 268.9 228 63.2
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 4.8e-70 268.5 224 58.5
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.2e-65 253.8 153 82.4
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 1.5e-63 246.9 153 78.4
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.1e-61 240.7 179 67.0
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 7.0e-61 238.0 152 77.0
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 4.7e-57 225.3 152 73.7
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 3.4e-55 219.2 146 74.7
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 8.3e-54 214.5 169 63.9
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 7.0e-53 211.5 130 80.0
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 6.0e-52 208.4 229 53.3
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 8.6e-51 204.5 124 83.9
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 8.0e-49 198.0 220 53.2
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 1.5e-47 193.7 107 88.8
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 5.1e-43 178.7 111 79.3
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 5.1e-43 178.7 111 79.3
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 1.1e-42 177.6 99 87.9
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 6.2e-41 171.8 122 68.0
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 5.2e-40 168.7 123 69.1
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 2.6e-39 166.4 88 94.3
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 5.8e-39 165.2 108 79.6
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 5.8e-39 165.2 148 59.5
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 1.1e-37 161.0 124 65.3
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 6.0e-36 155.2 122 66.4
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 2.8e-33 146.4 196 38.8
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.9e-26 123.6 111 57.7
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 8.1e-25 118.2 133 54.9
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 2.4e-24 116.7 81 72.8
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 3.5e-20 102.8 57 93.0
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 7.6e-15 85.1 61 70.5
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.9e-11 72.8 81 46.9
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 1.3e-09 67.8 48 70.8
MD03G1018200 Malus domestica HOM05D004698 ORTHO05D005699 8.4e-06 55.1 46 52.2


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