Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 2.5e-133 478.8 241 100.0
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 3.6e-108 395.2 341 63.3
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 9.8e-106 387.1 339 61.7
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.4e-105 384.4 339 61.4
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 7.8e-103 377.5 352 59.1
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.0e-102 374.8 198 89.9
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 5.6e-101 371.3 198 90.4
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 9.2e-96 354.0 196 86.2
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 4.7e-92 341.7 198 80.8
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 8.1e-92 340.9 196 82.1
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 6.8e-91 337.8 341 54.0
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 5.8e-90 334.7 196 81.6
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 9.8e-90 334.0 196 80.6
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 9.8e-90 334.0 198 79.8
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 9.8e-90 334.0 196 81.1
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 9.8e-90 334.0 198 78.8
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 1.3e-89 333.6 199 80.4
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.7e-89 333.2 196 79.1
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.7e-89 333.2 196 80.1
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 8.3e-89 330.9 196 80.1
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.1e-88 330.5 197 77.2
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.4e-88 330.1 198 77.8
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.4e-88 330.1 196 79.1
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 5.4e-88 328.2 198 77.8
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 5.4e-88 328.2 196 78.6
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 7.1e-88 327.8 198 78.3
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 7.1e-88 327.8 341 52.8
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.2e-87 327.0 202 76.7
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.2e-87 327.0 199 79.4
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.2e-87 327.0 199 79.4
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.2e-87 327.0 198 78.8
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.7e-87 325.9 199 78.9
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 2.7e-87 325.9 198 78.3
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 3.5e-87 325.5 203 75.9
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 4.6e-87 325.1 198 77.8
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 6.0e-87 324.7 341 52.5
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.0e-86 323.9 198 76.8
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.0e-86 323.9 198 77.3
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.3e-86 323.6 196 80.1
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 2.3e-86 322.8 198 78.8
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 3.0e-86 322.4 198 76.8
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 3.0e-86 322.4 198 77.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 3.9e-86 322.0 196 79.6
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 5.1e-86 321.6 197 77.7
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 5.1e-86 321.6 340 52.6
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 5.1e-86 321.6 198 75.3
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 6.6e-86 321.2 198 79.3
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 8.6e-86 320.9 198 75.3
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.6e-86 320.9 198 77.8
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.6e-86 320.9 198 77.8
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 8.6e-86 320.9 330 53.6
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 8.6e-86 320.9 197 78.7
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.5e-85 320.1 198 74.7
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.5e-85 320.1 198 74.7
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.5e-85 320.1 199 74.9
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-85 319.7 196 78.1
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-85 319.7 196 78.1
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.5e-85 319.3 196 78.1
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.5e-85 319.3 196 78.1
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 2.5e-85 319.3 340 51.8
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 3.3e-85 318.9 198 77.8
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 9.5e-85 317.4 196 78.1
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.2e-84 317.0 196 77.6
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.6e-84 316.6 198 76.3
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.6e-84 316.6 198 76.3
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 2.1e-84 316.2 196 79.1
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 2.1e-84 316.2 198 76.3
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.1e-84 316.2 198 76.8
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 2.8e-84 315.8 197 74.6
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.8e-84 315.8 199 75.4
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.8e-84 315.8 198 75.3
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.6e-84 315.5 199 74.9
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.1e-83 313.9 196 77.0
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.1e-83 313.9 196 76.5
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.4e-83 313.5 198 72.7
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.8e-83 313.2 198 73.7
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 4.0e-83 312.0 196 78.1
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 3.4e-82 308.9 196 76.0
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 4.4e-82 308.5 198 72.2
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 4.4e-82 308.5 196 75.5
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 5.8e-82 308.1 198 73.7
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 7.6e-82 307.8 198 71.7
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.3e-81 307.0 198 71.7
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 2.9e-81 305.8 196 71.9
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 8.4e-81 304.3 198 74.2
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.4e-80 303.5 198 71.2
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.9e-80 303.1 198 71.7
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.9e-80 303.1 199 72.9
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 5.4e-80 301.6 201 71.1
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 7.1e-80 301.2 198 71.7
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 9.2e-80 300.8 199 70.4
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 2.7e-79 299.3 302 51.7
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 6.0e-79 298.1 199 71.4
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 7.8e-79 297.7 198 69.7
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.0e-78 297.4 198 70.2
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 6.6e-78 294.7 196 70.9
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 8.6e-78 294.3 202 69.8
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.1e-77 293.9 198 68.2
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 2.8e-76 289.3 200 70.5
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 3.6e-76 288.9 200 70.5
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 6.2e-76 288.1 196 70.4
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 5.2e-75 285.0 203 67.5
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 2.0e-74 283.1 209 66.0
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.3e-73 280.4 211 65.9
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.3e-73 280.4 210 65.7
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 2.2e-73 279.6 209 65.1
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.9e-73 278.5 210 65.2
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 6.4e-73 278.1 210 64.8
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 6.4e-73 278.1 209 65.1
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 8.4e-73 277.7 210 64.3
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-72 277.3 210 64.3
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.1e-72 277.3 218 63.8
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.9e-72 276.6 196 64.3
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 2.4e-72 276.2 214 64.0
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.2e-71 273.9 205 65.9
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 3.5e-71 272.3 204 64.7
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 3.3e-69 265.8 207 63.3
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.3e-68 263.8 199 65.8
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.8e-67 260.0 196 62.2
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 4.0e-67 258.8 196 61.2
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.6e-63 246.9 297 46.5
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 6.0e-63 245.0 206 60.7
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.7e-62 243.4 201 60.7
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 5.1e-62 241.9 198 64.1
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.1e-53 214.2 123 82.9
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.0e-49 201.1 202 53.0
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 3.8e-49 199.1 123 77.2
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 2.4e-43 179.9 201 45.3
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 9.0e-43 177.9 210 40.5
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.9e-41 172.9 144 61.1
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 2.9e-41 172.9 202 41.1
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 4.2e-32 142.5 165 46.7
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.2e-24 115.2 66 81.8
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 6.7e-22 108.6 79 62.0
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 6.7e-22 108.6 79 62.0
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 8.8e-22 108.2 124 50.0
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 9.7e-21 104.8 186 39.2
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 3.7e-20 102.8 79 60.8
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 8.2e-20 101.7 79 58.2
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 8.2e-20 101.7 79 58.2
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.6e-18 97.4 134 40.3
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 5.5e-16 89.0 51 76.5
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-14 84.3 59 62.7
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.3e-12 77.8 49 69.4
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 1.3e-12 77.8 49 69.4
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-11 74.3 197 25.4
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.8e-11 73.9 55 72.7
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.0e-09 65.9 35 94.3
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.9e-08 63.9 39 82.1
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.4e-06 57.8 46 67.4


User provided reference genes

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