Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 3.3e-229 798.1 428 100.0
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-140 503.1 428 72.0
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.8e-125 451.1 495 60.4
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.9e-123 446.8 486 59.5
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 3.2e-123 446.0 486 60.5
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.2e-123 444.5 495 59.6
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.8e-122 441.4 486 60.7
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.3e-121 439.9 495 59.6
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 6.2e-95 352.1 498 48.4
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.4e-93 345.9 492 48.8
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 8.7e-89 331.6 492 45.9
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 3.6e-87 326.2 487 46.0
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 8.4e-84 315.1 224 81.7
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 2.1e-79 300.4 492 45.7
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.2e-79 298.9 476 46.8
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.1e-78 298.1 492 45.5
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 7.6e-77 292.0 489 42.1
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 2.2e-76 290.4 489 42.5
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 6.4e-76 288.9 491 42.8
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 3.3e-72 276.6 492 41.1
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 4.5e-69 266.2 490 40.6
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 5.8e-69 265.8 490 40.6
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 5.8e-69 265.8 494 40.7
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 7.6e-69 265.4 489 39.7
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.0e-68 265.0 489 39.3
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 2.2e-68 263.8 486 39.7
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 2.9e-68 263.5 280 57.9
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 2.9e-68 263.5 487 39.4
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.8e-68 263.1 490 40.4
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 5.0e-68 262.7 163 95.7
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 5.0e-68 262.7 163 89.0
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 1.9e-67 260.8 488 39.1
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.9e-67 260.8 490 39.0
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 2.5e-67 260.4 493 39.4
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 4.2e-67 259.6 491 40.1
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 1.2e-66 258.1 494 38.1
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 1.8e-65 254.2 493 38.7
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 3.0e-65 253.4 494 38.1
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 3.0e-65 253.4 487 38.4
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 3.0e-65 253.4 490 36.7
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.7e-65 252.3 492 38.2
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 1.1e-64 251.5 493 36.7
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.1e-64 251.5 439 41.2
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 1.5e-64 251.1 492 38.2
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 3.3e-64 250.0 496 37.3
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 7.4e-64 248.8 492 37.6
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 7.4e-64 248.8 500 37.8
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 7.4e-64 248.8 488 36.9
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 3.7e-63 246.5 486 38.3
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.4e-62 244.6 493 37.5
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 1.4e-62 244.6 487 37.2
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 1.8e-62 244.2 493 35.9
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 2.4e-62 243.8 484 36.6
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.4e-62 243.8 489 37.6
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 5.3e-62 242.7 496 36.3
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 6.9e-62 242.3 491 39.1
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 6.9e-62 242.3 491 36.7
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 9.0e-62 241.9 497 36.8
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 1.2e-61 241.5 490 37.8
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 1.2e-61 241.5 496 36.5
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-60 238.0 334 51.8
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 2.2e-60 237.3 490 40.2
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 2.2e-60 237.3 494 36.6
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 2.2e-60 237.3 486 37.4
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 2.9e-60 236.9 504 39.7
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 2.9e-60 236.9 484 37.6
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 2.9e-60 236.9 475 37.3
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 3.8e-60 236.5 495 40.4
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 3.8e-60 236.5 487 37.0
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 1.1e-59 235.0 479 35.9
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.4e-59 234.6 492 36.2
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 3.2e-59 233.4 484 37.2
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 4.2e-59 233.0 484 37.4
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 9.4e-59 231.9 494 37.0
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 9.4e-59 231.9 484 37.2
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 1.6e-58 231.1 490 36.5
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.1e-58 230.7 503 39.4
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 2.7e-58 230.3 487 38.0
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 3.6e-58 229.9 490 36.7
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 6.1e-58 229.2 495 39.2
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 6.1e-58 229.2 552 33.2
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 7.9e-58 228.8 492 34.6
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 3.0e-57 226.9 484 37.6
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 3.9e-57 226.5 488 36.1
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 8.8e-57 225.3 454 39.0
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.1e-56 224.9 494 34.6
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 1.1e-56 224.9 486 38.3
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.5e-56 224.6 480 34.8
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 2.0e-56 224.2 489 35.4
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 2.5e-56 223.8 502 36.3
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 2.5e-56 223.8 517 34.4
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 3.3e-56 223.4 486 38.3
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 3.3e-56 223.4 320 45.3
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 4.3e-56 223.0 493 36.9
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 5.7e-56 222.6 518 34.9
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.7e-55 221.1 483 34.8
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.2e-55 220.7 495 38.8
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 3.7e-55 219.9 486 38.1
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 3.7e-55 219.9 486 38.3
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 6.3e-55 219.2 483 34.0
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 4.1e-54 216.5 441 37.6
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 5.3e-54 216.1 502 36.9
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 9.1e-54 215.3 486 33.3
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 5.9e-53 212.6 485 33.4
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.0e-52 211.8 479 34.4
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 1.4e-51 208.0 484 32.4
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 5.5e-51 206.1 483 33.1
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 5.5e-51 206.1 484 34.3
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 1.2e-50 204.9 484 35.7
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 1.8e-49 201.1 448 34.8
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.8e-46 191.0 459 33.8
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 3.1e-46 190.3 500 32.8
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 1.5e-45 188.0 448 32.6
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.9e-44 183.7 167 76.0
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 8.5e-44 182.2 280 42.5
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.9e-43 181.0 285 44.6
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-42 177.9 105 88.6
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 2.1e-42 177.6 105 89.5
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 3.6e-42 176.8 148 77.7
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 6.1e-42 176.0 105 88.6
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 2.8e-39 167.2 486 29.6
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.2e-37 161.8 355 35.8
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 7.7e-37 159.1 469 31.6
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 2.2e-36 157.5 487 29.6
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 5.5e-35 152.9 337 38.9
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 1.6e-34 151.4 469 30.1
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 2.1e-34 151.0 173 56.6
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 4.7e-34 149.8 426 33.6
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 6.1e-34 149.4 204 45.6
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 2.2e-31 141.0 414 29.7
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 8.3e-31 139.0 124 59.7
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 3.1e-30 137.1 492 25.6
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 2.9e-28 130.6 334 30.5
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 8.5e-28 129.0 84 81.0
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 4.0e-25 120.2 347 34.3
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 1.3e-23 115.2 377 30.8
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 8.3e-23 112.5 76 71.1
RcHm_v2.0_Chr1g0314551 Rosa chinensis HOM05D004469 ORTHO05D342664 1.3e-20 105.1 107 71.0
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 6.1e-18 96.3 51 96.1
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 6.3e-15 86.3 242 32.6
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 7.8e-13 79.3 40 97.5
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-11 74.3 36 94.4
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 4.3e-11 73.6 305 26.9
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 2.8e-10 70.9 85 44.7
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 8.0e-10 69.3 50 76.0
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-08 65.5 96 37.5
RcHm_v2.0_Chr7g0226011 Rosa chinensis HOM05D004469 ORTHO05D345385 9.2e-06 55.8 35 80.0


User provided reference genes

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