Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0078711 Rosa chinensis HOM05D011862 ORTHO05D014222 8.9e-78 293.5 146 100.0
RcHm_v2.0_Chr7g0216841 Rosa chinensis HOM05D011862 ORTHO05D014222 2.4e-30 136.0 69 94.2
RcHm_v2.0_Chr6g0298871 Rosa chinensis HOM05D000103 ORTHO05D000049 2.0e-24 116.3 72 81.9
FvH4_2g29822 Fragaria vesca HOM05D000103 ORTHO05D000049 2.8e-23 112.5 71 80.3
FAN24G2711 Fragaria x ananassa HOM05D000103 ORTHO05D000049 2.8e-23 112.5 71 80.3
FAN27G2660 Fragaria x ananassa HOM05D000103 ORTHO05D000049 1.3e-20 103.6 74 74.3
Prupe.1G471300 Prunus persica HOM05D000103 ORTHO05D000049 2.4e-14 82.8 72 59.7
FAN20G2746 Fragaria x ananassa HOM05D000103 ORTHO05D000049 9.1e-14 80.9 73 54.8
FvH4_2g29824 Fragaria vesca HOM05D000103 ORTHO05D000049 1.7e-12 76.6 73 52.1
RcHm_v2.0_Chr6g0298901 Rosa chinensis HOM05D000103 ORTHO05D000049 1.1e-11 73.9 83 50.6
FAN24G0289 Fragaria x ananassa HOM05D000103 ORTHO05D000049 1.5e-11 73.6 73 50.7
MD15G1117800 Malus domestica HOM05D000103 ORTHO05D000049 2.5e-11 72.8 72 55.6
QL12p031708 Quercus lobata HOM05D000103 ORTHO05D000049 2.7e-10 69.3 85 48.2
Sopen08g021560 Solanum pennellii HOM05D000103 ORTHO05D000049 6.1e-10 68.2 85 45.9
Cfa013199 Carpinus fangiana HOM05D000103 ORTHO05D000049 1.0e-09 67.4 79 48.1
HPP92_003634 Vanilla planifolia HOM05D000103 ORTHO05D000049 1.0e-09 67.4 76 46.1
Potri.018G032900 Populus trichocarpa HOM05D000103 ORTHO05D000049 1.4e-09 67.0 84 47.6
Prupe.1G471400 Prunus persica HOM05D000103 ORTHO05D000049 1.4e-09 67.0 85 47.1
Cfa013197 Carpinus fangiana HOM05D000103 ORTHO05D000049 1.8e-09 66.6 82 47.6
RcHm_v2.0_Chr2g0172861 Rosa chinensis HOM05D011862 ORTHO05D014222 1.8e-09 66.6 52 59.6
MD08G1141400 Malus domestica HOM05D000103 ORTHO05D000049 2.3e-09 66.2 85 47.1
Prupe.1G471200 Prunus persica HOM05D000103 ORTHO05D000049 2.3e-09 66.2 79 48.1
MD15G1117900 Malus domestica HOM05D000103 ORTHO05D000049 3.0e-09 65.9 85 47.1
Sc23g0006980 Simmondsia chinensis HOM05D000103 ORTHO05D000049 3.0e-09 65.9 71 50.7
Solyc08g067620.2 Solanum lycopersicum HOM05D000103 ORTHO05D000049 4.0e-09 65.5 85 43.5
Sopen08g021570 Solanum pennellii HOM05D000103 ORTHO05D000049 4.0e-09 65.5 85 43.5
PGSC0003DMG401002262 Solanum tuberosum HOM05D000103 ORTHO05D000049 4.0e-09 65.5 85 43.5
CiPaw.07G219200 Carya illinoinensis HOM05D000103 ORTHO05D000049 5.2e-09 65.1 82 46.3
COL.COLO4_24018 Corchorus olitorius HOM05D000103 ORTHO05D000049 5.2e-09 65.1 83 48.2
TWI32G0848 Tripterygium wilfordii HOM05D000103 ORTHO05D000049 6.7e-09 64.7 86 46.5
Gohir.D08G103000 Gossypium hirsutum HOM05D000103 ORTHO05D000049 8.8e-09 64.3 85 44.7
Gorai.004G111000 Gossypium raimondii HOM05D000103 ORTHO05D000049 8.8e-09 64.3 85 44.7
Nn2g11871 Nelumbo nucifera HOM05D000103 ORTHO05D000049 8.8e-09 64.3 82 43.9
Solyc08g067610.3 Solanum lycopersicum HOM05D000103 ORTHO05D000049 8.8e-09 64.3 85 43.5
Cpa.g.sc603.3 Carica papaya HOM05D000103 ORTHO05D000049 1.2e-08 63.9 87 44.8
Sabra18G0033700 Salix brachista HOM05D000103 ORTHO05D000049 1.2e-08 63.9 84 42.9
Sc09g0008710 Simmondsia chinensis HOM05D000103 ORTHO05D000049 1.2e-08 63.9 71 47.9
MD08G1140900 Malus domestica HOM05D000103 ORTHO05D000049 1.5e-08 63.5 73 46.6
CSS0045825 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 2.0e-08 63.2 103 41.7
CAN.G506.14 Capsicum annuum HOM05D000103 ORTHO05D000049 2.0e-08 63.2 85 42.4
Cc11_g01470 Coffea canephora HOM05D000103 ORTHO05D000049 2.6e-08 62.8 103 39.8
Potri.006G248500 Populus trichocarpa HOM05D000103 ORTHO05D000049 2.6e-08 62.8 84 42.9
Rhsim07G0220600 Rhododendron simsii HOM05D000103 ORTHO05D000049 2.6e-08 62.8 86 44.2
Sabra06G0194500 Salix brachista HOM05D000103 ORTHO05D000049 2.6e-08 62.8 84 40.5
AUR62032359 Chenopodium quinoa HOM05D000103 ORTHO05D000049 3.3e-08 62.4 72 48.6
QL12p031684 Quercus lobata HOM05D000103 ORTHO05D000049 3.3e-08 62.4 87 46.0
TWI34G0960 Tripterygium wilfordii HOM05D000103 ORTHO05D000049 3.3e-08 62.4 78 47.4
Haze_21600 Corylus avellana HOM05D000103 ORTHO05D000049 4.4e-08 62.0 85 45.9
FAN14G4966 Fragaria x ananassa HOM05D011862 ORTHO05D014222 4.4e-08 62.0 52 51.9
Ciclev10010431m.g Citrus clementina HOM05D000103 ORTHO05D000049 5.7e-08 61.6 85 48.2
Dinv30197 Davidia involucrata HOM05D000103 ORTHO05D000049 5.7e-08 61.6 87 42.5
Duzib150G0165 Durio zibethinus HOM05D000103 ORTHO05D000049 5.7e-08 61.6 85 45.9
Eucgr.C02833 Eucalyptus grandis HOM05D000103 ORTHO05D000049 5.7e-08 61.6 87 44.8
Eucgr.C02834 Eucalyptus grandis HOM05D000103 ORTHO05D000049 5.7e-08 61.6 72 48.6
Thecc.09G147100 Theobroma cacao HOM05D000103 ORTHO05D000049 5.7e-08 61.6 85 44.7
TWI32G0747 Tripterygium wilfordii HOM05D000103 ORTHO05D000049 5.7e-08 61.6 86 43.0
GSVIVG01035784001 Vitis vinifera HOM05D000103 ORTHO05D000049 5.7e-08 61.6 74 48.6
AUR62024863 Chenopodium quinoa HOM05D000103 ORTHO05D000049 7.5e-08 61.2 72 48.6
Gohir.D03G064600 Gossypium hirsutum HOM05D000103 ORTHO05D000049 7.5e-08 61.2 81 44.4
Gorai.013G110000 Gossypium raimondii HOM05D000103 ORTHO05D000049 7.5e-08 61.2 81 44.4
RcHm_v2.0_Chr6g0298911 Rosa chinensis HOM05D000103 ORTHO05D000049 7.5e-08 61.2 82 41.5
TAR636G3082 Trochodendron aralioides HOM05D000103 ORTHO05D000049 7.5e-08 61.2 92 42.4
FvH4_2g29840 Fragaria vesca HOM05D000103 ORTHO05D000049 9.7e-08 60.8 83 44.6
Aqoxy3G01632 Aquilegia oxysepala HOM05D000103 ORTHO05D000049 1.3e-07 60.5 81 43.2
FAN15G3046 Fragaria x ananassa HOM05D000103 ORTHO05D000049 1.3e-07 60.5 88 37.5
Gohir.A08G090124 Gossypium hirsutum HOM05D000103 ORTHO05D000049 1.3e-07 60.5 85 42.4
Lj8C614G7 Lonicera japonica HOM05D000103 ORTHO05D000049 1.3e-07 60.5 74 50.0
Rhsim07G0101200 Rhododendron simsii HOM05D000103 ORTHO05D000049 1.3e-07 60.5 89 41.6
Zm00001eb205480 Zea mays HOM05D000103 ORTHO05D000049 1.3e-07 60.5 72 43.1
CiPaw.07G219100 Carya illinoinensis HOM05D000103 ORTHO05D000049 1.7e-07 60.1 107 38.3
FAN09G0781 Fragaria x ananassa HOM05D011862 ORTHO05D014222 1.7e-07 60.1 52 50.0
Lj8C613T4 Lonicera japonica HOM05D000103 ORTHO05D000049 1.7e-07 60.1 104 41.3
TAR603G0004 Trochodendron aralioides HOM05D000103 ORTHO05D000049 1.7e-07 60.1 93 39.8
vmacro05215 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 1.7e-07 60.1 85 38.8
Gohir.A02G109705 Gossypium hirsutum HOM05D000103 ORTHO05D000049 2.2e-07 59.7 81 44.4
Hund25696 Selenicereus undatus HOM05D000103 ORTHO05D000049 2.2e-07 59.7 71 43.7
FvH4_6g51240 Fragaria vesca HOM05D011862 ORTHO05D014222 2.8e-07 59.3 52 50.0
HanXRQChr13g0402091 Helianthus annuus HOM05D000103 ORTHO05D000049 2.8e-07 59.3 76 44.7
Nn2g11872 Nelumbo nucifera HOM05D000103 ORTHO05D000049 2.8e-07 59.3 90 37.8
Nitab4.5_0000125g0380 Nicotiana tabacum HOM05D000103 ORTHO05D000049 3.7e-07 58.9 87 40.2
COL.COLO4_24019 Corchorus olitorius HOM05D000103 ORTHO05D000049 4.8e-07 58.5 93 40.9
vmacro05210 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 4.8e-07 58.5 103 40.8
vmacro05213 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 4.8e-07 58.5 89 41.6
CSS0046731 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 6.3e-07 58.2 85 42.4
CDE02G4583 Ceratophyllum demersum HOM05D000103 ORTHO05D000049 6.3e-07 58.2 78 39.7
MBI04_g08371_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D000049 6.3e-07 58.2 86 41.9
Actinidia15702 Actinidia chinensis HOM05D000103 ORTHO05D000049 8.2e-07 57.8 91 40.7
Lj7C715T5 Lonicera japonica HOM05D000103 ORTHO05D000049 8.2e-07 57.8 85 44.7
Rhsim07G0149800 Rhododendron simsii HOM05D000103 ORTHO05D000049 8.2e-07 57.8 83 42.2
vmacro05211 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 8.2e-07 57.8 105 41.0
Ah.12g063680 Amaranthus hybridus HOM05D000103 ORTHO05D000049 1.1e-06 57.4 75 42.7
CDE02G0660 Ceratophyllum demersum HOM05D000103 ORTHO05D000049 1.1e-06 57.4 75 41.3
ECA246G1525 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.1e-06 57.4 78 43.6
Lsat_1_v5_gn_5_32461 Lactuca sativa HOM05D000103 ORTHO05D000049 1.1e-06 57.4 82 41.5
Nitab4.5_0003201g0020 Nicotiana tabacum HOM05D000103 ORTHO05D000049 1.1e-06 57.4 87 39.1
Oeu031738.1 Olea europaea HOM05D000103 ORTHO05D000049 1.1e-06 57.4 85 41.2
Rhsim07G0149900 Rhododendron simsii HOM05D000103 ORTHO05D000049 1.1e-06 57.4 84 44.0
RcHm_v2.0_Chr6g0298851 Rosa chinensis HOM05D000103 ORTHO05D000049 1.1e-06 57.4 85 40.0
Ah.12g063690 Amaranthus hybridus HOM05D000103 ORTHO05D000049 1.4e-06 57.0 76 43.4
FAN20G0694 Fragaria x ananassa HOM05D000103 ORTHO05D000049 1.4e-06 57.0 90 41.1
MBI01_g03570_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D000049 1.4e-06 57.0 85 43.5
Rhsim04G0069300 Rhododendron simsii HOM05D000103 ORTHO05D000049 1.4e-06 57.0 107 39.3
Rhsim04G0069400 Rhododendron simsii HOM05D000103 ORTHO05D000049 1.4e-06 57.0 104 38.5
HPP92_021528 Vanilla planifolia HOM05D000103 ORTHO05D000049 1.4e-06 57.0 72 47.2
CDE02G2999 Ceratophyllum demersum HOM05D000103 ORTHO05D000049 1.8e-06 56.6 75 41.3
FAN02G2635 Fragaria x ananassa HOM05D011862 ORTHO05D014222 1.8e-06 56.6 52 50.0
Peaxi162Scf00251g00071 Petunia axillaris HOM05D000103 ORTHO05D000049 1.8e-06 56.6 112 33.9
TAR603G0003 Trochodendron aralioides HOM05D000103 ORTHO05D000049 1.8e-06 56.6 92 38.0
TAR636G1520 Trochodendron aralioides HOM05D000103 ORTHO05D000049 1.8e-06 56.6 92 38.0
FvH4_2g29820 Fragaria vesca HOM05D000103 ORTHO05D000049 2.4e-06 56.2 85 41.2
Manes.03G018600 Manihot esculenta HOM05D000103 ORTHO05D000049 2.4e-06 56.2 83 39.8
Cc11_g01430 Coffea canephora HOM05D000103 ORTHO05D000049 3.1e-06 55.8 85 42.4
Rhsim07G0150400 Rhododendron simsii HOM05D000103 ORTHO05D000049 3.1e-06 55.8 89 40.4
Cfa002037 Carpinus fangiana HOM05D000103 ORTHO05D000049 4.1e-06 55.5 77 44.2
Cfa002038 Carpinus fangiana HOM05D000103 ORTHO05D000049 4.1e-06 55.5 70 47.1
MBI04_g05154_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D000049 5.3e-06 55.1 87 43.7
vmacro05224 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 5.3e-06 55.1 84 40.5
ECA246G1806 Erigeron canadensis HOM05D000103 ORTHO05D000049 7.0e-06 54.7 72 45.8
PSO017G3207 Papaver somniferum HOM05D000103 ORTHO05D000049 7.0e-06 54.7 81 45.7
TAR606G0002 Trochodendron aralioides HOM05D000103 ORTHO05D000049 7.0e-06 54.7 92 37.0
TAR626G1209 Trochodendron aralioides HOM05D000103 ORTHO05D000049 7.0e-06 54.7 80 42.5
Actinidia14632 Actinidia chinensis HOM05D000103 ORTHO05D000049 9.1e-06 54.3 85 38.8
EL10Ac2g02559 Beta vulgaris HOM05D000103 ORTHO05D000049 9.1e-06 54.3 72 44.4
vmacro22057 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 9.1e-06 54.3 85 38.8


User provided reference genes

Program Settings