Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 5.7e-181 637.5 330 100.0
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 1.5e-157 559.7 332 87.3
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.1e-138 496.1 332 77.7
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 6.0e-138 494.6 332 77.7
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.1e-134 482.3 332 76.8
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.0e-133 479.6 330 76.4
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.1e-131 473.8 330 72.4
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 3.4e-125 452.2 333 71.2
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.4e-123 446.8 333 69.1
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.3e-111 407.1 333 64.3
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.6e-111 406.8 332 62.3
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 2.8e-111 406.0 332 64.2
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 6.2e-111 404.8 333 64.6
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 2.0e-109 399.8 332 62.3
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 9.3e-107 391.0 333 61.9
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 1.2e-106 390.6 332 62.0
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 4.6e-106 388.7 333 61.3
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.8e-105 386.7 333 61.9
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 3.9e-105 385.6 326 62.9
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 8.7e-105 384.4 333 60.4
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.5e-104 383.6 333 61.3
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 4.3e-104 382.1 328 58.8
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 4.3e-104 382.1 331 61.0
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 7.4e-104 381.3 332 61.4
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 1.3e-103 380.6 332 61.1
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.4e-102 377.1 330 59.1
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 3.1e-102 375.9 331 59.5
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 6.9e-102 374.8 331 60.1
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 9.0e-102 374.4 334 59.9
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 2.6e-101 372.9 334 59.3
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 5.8e-101 371.7 333 60.1
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 1.0e-100 370.9 333 60.1
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.3e-100 370.5 333 58.3
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 2.2e-100 369.8 333 58.6
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.8e-100 369.0 334 58.4
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 4.9e-100 368.6 332 58.4
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 6.5e-100 368.2 334 58.4
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.9e-99 366.7 325 59.4
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 1.9e-99 366.7 334 58.1
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 2.5e-99 366.3 333 57.7
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.5e-99 366.3 334 57.8
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 3.0e-97 359.4 333 54.1
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 8.7e-97 357.8 331 58.0
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 4.3e-96 355.5 326 56.1
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 4.3e-96 355.5 332 57.5
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.4e-96 354.8 339 57.2
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.3e-95 354.0 333 58.6
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.8e-95 352.8 333 58.6
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.1e-94 350.9 334 55.1
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.8e-94 350.1 335 57.6
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.8e-94 350.1 333 58.3
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.4e-94 349.7 329 58.1
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.1e-94 349.4 339 56.9
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 5.3e-94 348.6 338 54.4
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 6.9e-94 348.2 326 57.1
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 7.6e-93 344.7 385 48.8
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 1.0e-92 344.4 330 54.2
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.2e-91 339.3 331 55.0
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.2e-91 339.3 333 56.5
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 4.2e-91 339.0 340 53.8
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 5.5e-91 338.6 332 56.0
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 7.1e-91 338.2 279 61.3
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 2.7e-90 336.3 329 52.6
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 3.5e-90 335.9 340 54.4
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 3.5e-90 335.9 335 51.0
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 7.9e-90 334.7 273 61.9
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 5.1e-89 332.0 324 56.2
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 8.7e-89 331.3 335 55.2
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 8.7e-89 331.3 372 50.3
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.5e-88 330.5 332 54.2
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 2.5e-88 329.7 335 54.6
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 3.3e-88 329.3 337 54.3
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-87 327.4 338 55.6
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.6e-87 327.0 335 52.8
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 3.7e-87 325.9 335 53.7
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 6.3e-87 325.1 332 53.3
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 6.3e-87 325.1 320 51.9
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.1e-86 324.3 338 55.0
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 4.1e-86 322.4 331 52.6
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 5.3e-86 322.0 342 51.8
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 6.9e-86 321.6 334 53.3
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 2.6e-85 319.7 285 57.5
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 2.6e-85 319.7 323 53.9
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.6e-85 319.7 340 51.8
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 4.5e-85 318.9 330 52.4
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 5.9e-85 318.5 362 51.4
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 7.7e-85 318.2 343 49.9
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 2.2e-84 316.6 323 53.6
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 8.5e-84 314.7 332 53.0
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 1.9e-83 313.5 334 52.4
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 1.9e-83 313.5 334 52.4
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 1.9e-83 313.5 334 52.4
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 4.6e-82 308.9 350 49.7
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.4e-81 307.4 332 49.4
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 2.3e-81 306.6 337 51.0
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.3e-81 306.6 331 50.8
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 5.1e-81 305.4 329 52.0
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 2.5e-80 303.1 326 52.5
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.5e-80 303.1 245 64.9
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.3e-80 302.8 339 49.9
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 7.4e-80 301.6 342 48.8
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 9.7e-80 301.2 330 50.0
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.2e-79 300.1 339 49.6
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 4.8e-79 298.9 339 49.3
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 1.8e-78 297.0 376 46.0
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 4.1e-78 295.8 273 55.3
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 9.1e-78 294.7 334 48.8
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 9.1e-78 294.7 334 48.8
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.5e-77 293.9 332 48.5
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 2.0e-77 293.5 330 49.7
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 3.4e-77 292.7 330 47.3
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.3e-76 290.8 338 48.2
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.7e-76 290.4 326 48.2
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.2e-76 290.0 326 50.0
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 2.2e-76 290.0 332 48.5
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 1.1e-75 287.7 336 49.7
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.1e-75 287.7 332 48.5
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 9.4e-75 284.6 248 59.3
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 1.2e-74 284.3 327 49.5
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.3e-73 280.0 307 49.2
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 3.9e-73 279.3 341 47.5
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 2.0e-72 276.9 339 48.4
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.3e-71 274.2 330 48.2
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 4.8e-71 272.3 339 47.5
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 6.3e-71 271.9 223 64.1
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 1.4e-70 270.8 339 47.2
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 5.5e-67 258.8 317 48.3
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 3.6e-66 256.1 332 45.8
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 6.1e-66 255.4 368 43.2
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 8.0e-66 255.0 307 51.1
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 6.7e-65 251.9 243 52.3
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 2.0e-64 250.4 235 55.7
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.7e-64 248.8 333 45.3
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 7.4e-64 248.4 264 49.2
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 1.7e-60 237.3 296 45.6
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.1e-59 234.6 329 44.7
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 2.5e-59 233.4 261 55.2
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 3.2e-59 233.0 323 42.7
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 6.5e-52 208.8 330 43.6
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 5.5e-51 205.7 216 53.7
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.0e-49 201.4 330 41.5
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.8e-49 200.7 203 55.2
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.2e-48 198.0 205 56.6
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.6e-48 196.8 163 61.3
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.7e-48 195.7 203 55.2
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-47 194.5 159 61.6
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.2e-45 188.0 330 38.2
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.0e-44 184.9 162 56.8
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.1e-43 181.4 176 57.4
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.5e-43 180.3 174 55.7
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 6.8e-41 172.2 329 38.9
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.3e-39 167.9 234 43.6
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.3e-36 157.1 143 58.0
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.3e-35 152.1 144 53.5
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.2e-33 146.0 123 59.3
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.5e-32 144.4 143 51.7
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.3e-31 141.4 136 50.7
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.6e-29 134.4 202 43.1
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 6.6e-28 129.0 127 49.6
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 9.5e-27 125.2 134 51.5
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 2.8e-26 123.6 209 39.7
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.3e-23 114.8 99 57.6
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 9.9e-16 88.6 92 48.9
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 5.4e-14 82.8 221 28.1
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 6.0e-13 79.3 306 27.5
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.7e-12 77.8 63 57.1
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 8.6e-12 75.5 90 44.4
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 7.3e-11 72.4 142 35.2
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.6e-10 71.2 65 55.4
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 4.0e-09 66.6 263 26.6


User provided reference genes

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