Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 1.2e-55 219.5 106 100.0
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 1.2e-44 183.0 107 84.1
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.2e-44 183.0 107 84.1
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.2e-44 183.0 107 84.1
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 2.8e-44 181.8 107 84.1
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.6e-39 166.0 98 81.6
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.3e-33 146.4 112 67.9
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 1.3e-22 109.8 109 55.0
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 3.0e-22 108.6 115 55.7
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 3.9e-22 108.2 110 55.5
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.5e-21 105.5 87 60.9
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 9.8e-18 93.6 101 50.5
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 1.4e-16 89.7 101 49.5
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 2.4e-16 89.0 101 48.5
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 5.4e-16 87.8 111 49.5
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 1.6e-15 86.3 107 49.5
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 2.1e-15 85.9 98 50.0
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 2.7e-15 85.5 104 47.1
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 3.5e-15 85.1 111 47.7
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 6.0e-15 84.3 110 44.5
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 1.3e-14 83.2 95 52.6
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 7.3e-13 77.4 87 48.3
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.2e-12 76.6 95 46.3
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.2e-12 76.6 95 46.3
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.2e-12 76.6 86 46.5
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.1e-12 75.9 86 50.0
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 2.8e-12 75.5 79 45.6
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 3.6e-12 75.1 91 48.4
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 4.7e-12 74.7 76 53.9
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 4.7e-12 74.7 84 54.8
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 6.2e-12 74.3 72 54.2
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 6.2e-12 74.3 89 49.4
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 1.8e-11 72.8 115 41.7
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 4.0e-11 71.6 72 54.2
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 4.0e-11 71.6 106 43.4
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 4.0e-11 71.6 99 45.5
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 5.2e-11 71.2 89 44.9
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 6.8e-11 70.9 83 53.0
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 6.8e-11 70.9 89 44.9
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 6.8e-11 70.9 89 44.9
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 3.4e-10 68.6 119 37.8
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 3.4e-10 68.6 93 43.0
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.4e-10 68.2 89 43.8
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 5.8e-10 67.8 92 45.7
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 7.6e-10 67.4 73 49.3
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 9.9e-10 67.0 65 53.8
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 9.9e-10 67.0 65 53.8
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 9.9e-10 67.0 103 42.7
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 1.3e-09 66.6 90 48.9
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 1.7e-09 66.2 90 46.7
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 1.7e-09 66.2 70 57.1
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 1.7e-09 66.2 62 61.3
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 2.2e-09 65.9 74 47.3
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 2.2e-09 65.9 82 47.6
QL08p003109 Quercus lobata HOM05D006736 ORTHO05D008459 2.2e-09 65.9 81 48.1
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 2.9e-09 65.5 108 41.7
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 2.9e-09 65.5 75 49.3
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 4.9e-09 64.7 80 52.5
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 4.9e-09 64.7 96 45.8
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 4.9e-09 64.7 75 49.3
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 6.4e-09 64.3 80 50.0
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 8.4e-09 63.9 65 56.9
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 1.1e-08 63.5 90 45.6
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 1.1e-08 63.5 90 45.6
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.4e-08 63.2 72 50.0
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 1.9e-08 62.8 90 46.7
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 2.4e-08 62.4 57 57.9
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 2.4e-08 62.4 57 57.9
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 2.4e-08 62.4 74 47.3
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 3.2e-08 62.0 107 42.1
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 4.1e-08 61.6 113 38.9
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 5.4e-08 61.2 65 55.4
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 7.1e-08 60.8 70 57.1
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 7.1e-08 60.8 64 57.8
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 9.2e-08 60.5 98 44.9
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 1.2e-07 60.1 85 43.5
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.2e-07 60.1 80 48.8
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.2e-07 60.1 52 61.5
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 1.6e-07 59.7 77 46.8
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 3.5e-07 58.5 90 43.3
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.5e-07 58.5 56 58.9
Phvul.008G281200 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 3.5e-07 58.5 89 40.4
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 4.6e-07 58.2 46 69.6
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 7.8e-07 57.4 85 41.2
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 1.3e-06 56.6 62 53.2
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 1.3e-06 56.6 112 35.7
ECA236G2479 Erigeron canadensis HOM05D006736 ORTHO05D008459 1.7e-06 56.2 59 50.8
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 1.7e-06 56.2 71 50.7
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 3.0e-06 55.5 116 37.9
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 3.9e-06 55.1 63 44.4
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 3.9e-06 55.1 82 42.7
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 3.9e-06 55.1 88 40.9
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 5.1e-06 54.7 84 41.7
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 5.1e-06 54.7 87 42.5
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 6.6e-06 54.3 87 42.5
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 8.6e-06 53.9 99 36.4


User provided reference genes

Program Settings