Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 2.5e-226 788.5 410 100.0
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.7e-203 712.6 410 90.0
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 6.6e-203 710.7 421 88.6
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.2e-201 706.4 421 88.1
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.8e-200 702.6 441 84.6
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 5.8e-199 697.6 441 83.7
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 1.4e-197 693.0 410 87.1
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 3.2e-197 691.8 410 87.1
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 7.8e-196 687.2 410 86.1
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 6.0e-188 661.0 409 83.1
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 3.0e-187 658.7 410 83.2
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 1.5e-186 656.4 411 81.8
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.9e-186 656.0 411 82.7
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.5e-186 655.6 411 82.7
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.4e-184 649.0 411 81.8
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 3.1e-184 648.7 416 81.5
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 8.9e-184 647.1 413 82.1
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 4.9e-182 641.3 414 81.6
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 1.4e-181 639.8 408 81.4
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.9e-181 639.4 412 81.3
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 3.2e-181 638.6 412 80.6
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 4.2e-181 638.3 410 80.2
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 3.5e-180 635.2 410 79.5
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.0e-180 634.4 414 79.2
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 3.0e-179 632.1 410 80.2
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.5e-178 629.0 412 79.9
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 7.3e-178 627.5 412 79.4
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 9.6e-178 627.1 410 79.0
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 2.1e-177 625.9 409 78.5
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 6.2e-177 624.4 413 78.2
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 6.2e-177 624.4 423 77.8
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 6.2e-177 624.4 415 79.8
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.1e-176 623.6 420 78.1
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 1.8e-176 622.9 415 79.8
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 4.0e-176 621.7 412 78.2
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 5.3e-176 621.3 408 78.9
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 9.0e-176 620.5 411 78.3
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.5e-175 619.8 408 79.2
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 1.5e-175 619.8 408 79.2
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 2.0e-175 619.4 413 78.5
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.6e-175 619.0 411 78.6
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 2.6e-175 619.0 430 76.7
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 3.4e-175 618.6 411 77.9
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 5.8e-175 617.8 406 78.6
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 5.8e-175 617.8 411 78.3
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 7.6e-175 617.5 415 76.1
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 9.9e-175 617.1 410 78.3
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 9.9e-175 617.1 412 78.2
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 9.9e-175 617.1 410 77.3
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 3.8e-174 615.1 410 77.8
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.1e-173 613.6 413 78.0
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 2.4e-173 612.5 417 77.7
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.4e-173 612.5 448 73.9
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 2.4e-173 612.5 412 77.2
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 2.4e-173 612.5 425 75.8
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 3.2e-173 612.1 415 76.9
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 3.2e-173 612.1 416 78.1
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.2e-173 612.1 410 76.6
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 7.1e-173 610.9 416 76.9
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 7.1e-173 610.9 415 78.6
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 9.3e-173 610.5 410 76.3
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 1.2e-172 610.1 413 78.9
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 1.2e-172 610.1 415 77.8
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 2.7e-172 609.0 418 78.0
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 7.8e-172 607.4 408 77.9
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 7.8e-172 607.4 410 75.9
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 3.0e-171 605.5 413 76.5
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 8.7e-171 604.0 412 76.9
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.5e-170 603.2 412 77.7
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.9e-170 602.8 412 77.4
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 3.3e-170 602.1 413 76.0
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 5.6e-170 601.3 413 77.2
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 7.3e-170 600.9 411 75.9
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.6e-169 599.7 430 75.1
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 2.8e-169 599.0 415 76.1
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 1.4e-168 596.7 410 75.6
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 1.8e-168 596.3 414 75.4
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 2.4e-168 595.9 414 75.4
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 4.0e-168 595.1 415 75.9
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 5.3e-168 594.7 415 74.5
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.2e-167 593.6 422 74.9
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 1.2e-167 593.6 420 75.7
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.2e-167 593.6 407 76.4
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.5e-167 593.2 411 75.4
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.5e-167 593.2 414 75.4
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 1.5e-167 593.2 420 75.0
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.6e-167 592.4 424 73.3
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.3e-166 590.1 410 75.6
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 3.8e-166 588.6 414 75.1
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 8.4e-166 587.4 414 74.6
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.0e-163 580.5 409 74.6
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.3e-163 580.1 409 74.1
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 9.6e-162 573.9 412 71.8
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 2.9e-158 562.4 417 73.1
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 6.5e-158 561.2 412 72.8
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 6.5e-158 561.2 411 74.0
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 2.5e-157 559.3 359 80.5
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 3.5e-156 555.4 390 74.1
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 2.3e-155 552.7 340 83.8
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.5e-154 549.3 360 77.8
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.5e-154 549.3 360 77.8
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 4.3e-154 548.5 416 70.4
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 1.1e-152 543.9 413 70.7
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.8e-152 543.1 478 65.3
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.8e-152 543.1 478 65.3
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 3.2e-149 532.3 350 78.6
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.4e-144 516.2 419 67.8
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 5.0e-142 508.4 315 83.2
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 5.1e-139 498.4 410 65.9
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 6.3e-137 491.5 349 73.4
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.8e-134 482.3 417 60.7
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.2e-132 477.2 357 71.1
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 4.4e-130 468.8 426 57.3
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.1e-122 444.1 428 62.1
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.0e-115 421.0 271 80.4
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 7.5e-114 414.8 331 63.1
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 4.1e-112 409.1 407 59.2
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 6.6e-102 375.2 324 65.7
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 5.5e-101 372.1 342 60.8
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 6.8e-99 365.2 362 58.3
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.3e-86 324.3 321 54.5
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 1.2e-82 311.2 419 43.2
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.0e-75 286.2 246 63.0
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 4.0e-75 286.2 420 40.0
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.2e-73 280.4 463 39.7
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 3.3e-69 266.5 469 36.2
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.2e-63 248.1 325 44.3
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 9.3e-56 221.9 126 82.5
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.6e-55 221.1 315 41.9
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 3.9e-54 216.5 134 82.1
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 6.4e-49 199.1 357 36.4
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 7.4e-45 185.7 336 35.4
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.1e-43 180.3 104 81.7
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 9.0e-43 178.7 104 80.8
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 5.8e-42 176.0 112 75.0
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.6e-36 157.9 130 65.4
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 3.2e-32 143.7 98 76.5
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.2e-31 141.7 120 66.7
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.0e-26 124.4 128 53.1
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 2.5e-24 117.5 65 89.2
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.3e-21 106.7 58 81.0
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 7.7e-18 95.9 74 66.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 6.5e-17 92.8 101 50.5
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 5.5e-16 89.7 65 69.2
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 5.5e-16 89.7 131 42.7
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 2.1e-15 87.8 60 76.7
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 2.1e-15 87.8 97 51.5
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 4.4e-13 80.1 46 84.8
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 7.0e-11 72.8 52 63.5
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 7.0e-11 72.8 59 64.4
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.2e-10 72.0 101 39.6
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 3.8e-09 67.0 36 86.1
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 3.8e-09 67.0 36 86.1
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 3.8e-09 67.0 36 86.1
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 8.5e-09 65.9 61 63.9
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 1.1e-08 65.5 67 55.2
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 1.1e-08 65.5 64 60.9
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 9.4e-08 62.4 36 86.1
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 2.1e-07 61.2 61 50.8
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 6.1e-07 59.7 93 46.2
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 6.1e-07 59.7 41 70.7
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.0e-06 58.9 43 69.8
arahy.Tifrunner.gnm1.ann1.MF977T Arachis hypogaea HOM05D000158 ORTHO05D000197 1.4e-06 58.5 61 54.1


User provided reference genes

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