Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0074991 Rosa chinensis HOM05D000162 ORTHO05D000090 1.4e-34 151.8 92 100.0
RcHm_v2.0_Chr5g0073691 Rosa chinensis HOM05D000162 ORTHO05D000090 1.2e-22 112.1 88 84.1
RcHm_v2.0_Chr5g0074981 Rosa chinensis HOM05D000162 ORTHO05D000090 5.9e-22 109.8 82 84.1
RcHm_v2.0_Chr5g0074951 Rosa chinensis HOM05D000162 ORTHO05D000090 7.7e-22 109.4 88 78.4
RcHm_v2.0_Chr5g0077441 Rosa chinensis HOM05D000162 ORTHO05D000090 2.5e-20 104.4 88 77.3
RcHm_v2.0_Chr5g0074141 Rosa chinensis HOM05D000162 ORTHO05D000090 1.6e-19 101.7 88 77.3
FAN25G2428 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.7e-19 100.1 89 74.2
FAN21G1717 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.4e-18 98.6 87 78.2
RcHm_v2.0_Chr5g0073761 Rosa chinensis HOM05D000162 ORTHO05D000090 1.4e-18 98.6 84 64.3
FvH4_3g42430 Fragaria vesca HOM05D000162 ORTHO05D000090 1.8e-18 98.2 92 57.6
FAN25G0716 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.2e-18 96.7 90 67.8
FAN21G3177 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.8e-18 96.3 92 54.3
RcHm_v2.0_Chr5g0069601 Rosa chinensis HOM05D000162 ORTHO05D000090 6.8e-18 96.3 89 70.8
FAN16G3207 Fragaria x ananassa HOM05D000162 ORTHO05D000090 8.8e-18 95.9 92 69.6
RcHm_v2.0_Chr5g0077521 Rosa chinensis HOM05D000162 ORTHO05D000090 8.8e-18 95.9 83 60.2
FAN25G0683 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.2e-17 95.5 90 55.6
RcHm_v2.0_Chr5g0069321 Rosa chinensis HOM05D000162 ORTHO05D000090 1.2e-17 95.5 88 76.1
FvH4_3g39890 Fragaria vesca HOM05D000162 ORTHO05D000090 2.6e-17 94.4 90 55.6
FAN21G3095 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.6e-17 94.4 90 54.4
RcHm_v2.0_Chr5g0071481 Rosa chinensis HOM05D000162 ORTHO05D000090 2.6e-17 94.4 88 60.2
FAN21G0456 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.4e-17 94.0 91 72.5
RcHm_v2.0_Chr5g0069581 Rosa chinensis HOM05D000162 ORTHO05D000090 3.4e-17 94.0 88 72.7
RcHm_v2.0_Chr5g0076241 Rosa chinensis HOM05D000162 ORTHO05D000090 3.4e-17 94.0 74 86.5
FvH4_3g35200 Fragaria vesca HOM05D000162 ORTHO05D000090 4.4e-17 93.6 86 76.7
FvH4_3g40130 Fragaria vesca HOM05D000162 ORTHO05D000090 5.7e-17 93.2 90 54.4
Prupe.6G106300 Prunus persica HOM05D000162 ORTHO05D000090 5.7e-17 93.2 90 71.1
Prupe.8G027800 Prunus persica HOM05D000162 ORTHO05D000090 9.8e-17 92.4 86 74.4
FAN11G3383 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.3e-16 92.0 89 71.9
Prupe.3G114700 Prunus persica HOM05D000162 ORTHO05D000090 1.7e-16 91.7 86 72.1
Prupe.6G081600 Prunus persica HOM05D000162 ORTHO05D000090 2.2e-16 91.3 86 74.4
FvH4_3g39940 Fragaria vesca HOM05D000162 ORTHO05D000090 2.8e-16 90.9 92 54.3
FAN16G0319 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.7e-16 90.5 89 70.8
FvH4_3g41820 Fragaria vesca HOM05D000162 ORTHO05D000090 6.3e-16 89.7 89 70.8
FvH4_3g38020 Fragaria vesca HOM05D000162 ORTHO05D000090 1.4e-15 88.6 88 71.6
FvH4_3g38070 Fragaria vesca HOM05D000162 ORTHO05D000090 1.4e-15 88.6 88 71.6
RcHm_v2.0_Chr5g0072921 Rosa chinensis HOM05D001814 ORTHO05D000090 1.4e-15 88.6 50 86.0
FAN25G0639 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.1e-15 87.0 88 68.2
FvH4_3g38940 Fragaria vesca HOM05D000162 ORTHO05D000090 7.0e-15 86.3 88 67.0
FAN07G1221 Fragaria x ananassa HOM05D000162 ORTHO05D000090 7.0e-15 86.3 88 68.2
FAN11G1276 Fragaria x ananassa HOM05D000162 ORTHO05D000090 7.0e-15 86.3 89 57.3
FAN11G2810 Fragaria x ananassa HOM05D000162 ORTHO05D000090 7.0e-15 86.3 88 67.0
FAN11G2311 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.2e-14 85.5 88 69.3
Prupe.3G138000 Prunus persica HOM05D000162 ORTHO05D000090 1.2e-14 85.5 86 68.6
RcHm_v2.0_Chr5g0072861 Rosa chinensis HOM05D000162 ORTHO05D000090 1.2e-14 85.5 50 80.0
RcHm_v2.0_Chr5g0076231 Rosa chinensis HOM05D000162 ORTHO05D000090 1.2e-14 85.5 88 71.6
Prupe.6G091200 Prunus persica HOM05D000162 ORTHO05D000090 1.6e-14 85.1 86 70.9
Prupe.6G093300 Prunus persica HOM05D000162 ORTHO05D000090 1.6e-14 85.1 92 54.3
FvH4_3g38590 Fragaria vesca HOM05D000162 ORTHO05D000090 2.0e-14 84.7 88 68.2
FvH4_3g13950 Fragaria vesca HOM05D000162 ORTHO05D000090 2.7e-14 84.3 89 67.4
FvH4_5g09470 Fragaria vesca HOM05D000162 ORTHO05D000090 2.7e-14 84.3 88 69.3
FAN11G0787 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.7e-14 84.3 89 67.4
RcHm_v2.0_Chr5g0075791 Rosa chinensis HOM05D000162 ORTHO05D003288 3.5e-14 84.0 92 52.2
FAN17G0052 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.5e-14 83.6 90 61.1
FAN16G3170 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.9e-14 83.2 92 62.0
RcHm_v2.0_Chr5g0071941 Rosa chinensis HOM05D000162 ORTHO05D000090 5.9e-14 83.2 80 57.5
Prupe.6G087600 Prunus persica HOM05D000162 ORTHO05D000090 7.7e-14 82.8 85 52.9
FAN11G2376 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.3e-13 82.0 92 51.1
FAN16G0588 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.2e-13 81.3 88 48.9
FAN21G1117 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.2e-13 81.3 88 65.9
FAN05G0618 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.9e-13 80.9 88 65.9
FAN25G3795 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.8e-13 80.5 89 50.6
Prupe.6G091000 Prunus persica HOM05D000162 ORTHO05D000090 3.8e-13 80.5 86 69.8
FAN16G0919 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.0e-13 80.1 81 51.9
FvH4_3g44300 Fragaria vesca HOM05D000162 ORTHO05D000090 6.5e-13 79.7 88 65.9
FAN11G0256 Fragaria x ananassa HOM05D000366 ORTHO05D000090 6.5e-13 79.7 88 65.9
FAN11G2213 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.5e-13 79.7 92 48.9
FAN11G3989 Fragaria x ananassa HOM05D000162 ORTHO05D000090 8.5e-13 79.3 92 50.0
FAN05G1495 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-12 78.6 88 64.8
FAN05G2421 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-12 78.6 88 63.6
FAN05G4140 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-12 78.6 88 64.8
FAN05G5463 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-12 78.6 88 64.8
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 1.5e-12 78.6 87 48.3
FAN11G3239 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-12 78.6 87 48.3
FAN21G2825 Fragaria x ananassa HOM05D000162 ORTHO05D003288 1.9e-12 78.2 88 64.8
FAN05G5335 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.5e-12 77.8 88 64.8
FAN05G1965 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.2e-12 77.4 88 50.0
FAN05G2783 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.2e-12 77.4 88 64.8
FvH4_3g37481 Fragaria vesca HOM05D000162 ORTHO05D000090 4.2e-12 77.0 88 61.4
FvH4_4g22280 Fragaria vesca HOM05D000162 ORTHO05D000090 4.2e-12 77.0 88 50.0
FAN16G0671 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.2e-12 77.0 55 70.9
FAN16G0746 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.2e-12 77.0 88 56.8
FAN21G0653 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.2e-12 77.0 81 63.0
FAN11G1863 Fragaria x ananassa HOM05D000162 ORTHO05D000090 7.2e-12 76.3 83 65.1
RcHm_v2.0_Chr5g0027731 Rosa chinensis HOM05D000162 ORTHO05D000090 7.2e-12 76.3 50 70.0
RcHm_v2.0_Chr5g0069231 Rosa chinensis HOM05D000162 ORTHO05D000090 7.2e-12 76.3 47 76.6
FvH4_3g40940 Fragaria vesca HOM05D000162 ORTHO05D000090 9.4e-12 75.9 50 72.0
FAN11G2742 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.4e-12 75.9 50 72.0
FAN21G1710 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.4e-12 75.9 50 72.0
FAN05G5046 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.2e-11 75.5 88 63.6
FAN12G2315 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.2e-11 75.5 88 59.1
FAN05G2167 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.6e-11 75.1 88 63.6
FAN05G5487 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.6e-11 75.1 88 63.6
FAN07G1899 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.6e-11 75.1 88 50.0
FAN16G1190 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.6e-11 75.1 88 50.0
FAN21G2507 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.1e-11 74.7 88 64.8
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 2.1e-11 74.7 50 70.0
Prupe.6G094000 Prunus persica HOM05D000162 ORTHO05D000090 4.7e-11 73.6 86 64.0
RcHm_v2.0_Chr5g0041821 Rosa chinensis HOM05D000162 ORTHO05D000090 4.7e-11 73.6 46 78.3
FAN16G0884 Fragaria x ananassa HOM05D000162 ORTHO05D000090 8.0e-11 72.8 92 58.7
Prupe.6G091400 Prunus persica HOM05D000162 ORTHO05D000090 1.0e-10 72.4 89 62.9
MD11G1115600 Malus domestica HOM05D000162 ORTHO05D000090 1.4e-10 72.0 82 46.3
FAN11G2498 Fragaria x ananassa HOM05D000044 ORTHO05D000090 2.3e-10 71.2 77 50.6
FvH4_3g43150 Fragaria vesca HOM05D000162 ORTHO05D000090 3.0e-10 70.9 88 42.0
FvH4_3g43170 Fragaria vesca HOM05D000162 ORTHO05D000090 3.0e-10 70.9 88 42.0
FvH4_4g22270 Fragaria vesca HOM05D000162 ORTHO05D000090 4.0e-10 70.5 88 47.7
FvH4_6g52550 Fragaria vesca HOM05D000162 ORTHO05D000090 4.0e-10 70.5 88 62.5
RcHm_v2.0_Chr5g0061091 Rosa chinensis HOM05D000162 ORTHO05D000090 4.0e-10 70.5 84 45.2
RcHm_v2.0_Chr5g0069351 Rosa chinensis HOM05D000162 ORTHO05D000090 6.8e-10 69.7 90 58.9
MD03G1113300 Malus domestica HOM05D000162 ORTHO05D000090 1.2e-09 68.9 86 44.2
RcHm_v2.0_Chr5g0072901 Rosa chinensis HOM05D000162 ORTHO05D000090 1.2e-09 68.9 88 60.2
FAN16G2035 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.4e-09 67.4 53 62.3
Prupe.6G195600 Prunus persica HOM05D000162 ORTHO05D000090 3.4e-09 67.4 50 68.0
FAN16G2089 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.4e-09 67.0 88 42.0
FAN21G0314 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.8e-09 65.9 50 60.0
FAN21G1786 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.8e-09 65.9 50 60.0
MD11G1126400 Malus domestica HOM05D000162 ORTHO05D000090 1.7e-08 65.1 85 47.1
FAN05G3453 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.2e-08 64.7 73 47.9
FAN25G2369 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.8e-08 64.3 92 53.3
FAN25G3591 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.8e-08 64.3 86 58.1
Prupe.6G090500 Prunus persica HOM05D000162 ORTHO05D000090 2.8e-08 64.3 55 56.4
FAN04G2497 Fragaria x ananassa HOM05D003302 ORTHO05D003785 6.3e-08 63.2 74 66.2
MD03G1103700 Malus domestica HOM05D000162 ORTHO05D000090 6.3e-08 63.2 86 59.3
Actinidia08438 Actinidia chinensis HOM05D000162 ORTHO05D000090 1.1e-07 62.4 84 36.9
FvH4_3g37480 Fragaria vesca HOM05D000162 ORTHO05D000090 2.4e-07 61.2 88 42.0
Cc07_g18990 Coffea canephora HOM05D000162 ORTHO05D000090 3.1e-07 60.8 90 38.9
FvH4_3g39650 Fragaria vesca HOM05D000162 ORTHO05D003288 4.1e-07 60.5 64 48.4
AUR62000377 Chenopodium quinoa HOM05D000162 ORTHO05D000090 7.0e-07 59.7 90 33.3
Actinidia04470 Actinidia chinensis HOM05D000162 ORTHO05D000090 1.6e-06 58.5 88 37.5
Cc07_g19010 Coffea canephora HOM05D000162 ORTHO05D000090 2.0e-06 58.2 85 38.8
Migut.F00914 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.7e-06 57.8 87 34.5
Cc07_g18960 Coffea canephora HOM05D000162 ORTHO05D000090 3.5e-06 57.4 85 37.6
Cc07_g18980 Coffea canephora HOM05D000162 ORTHO05D000090 3.5e-06 57.4 85 37.6
MD03G1113100 Malus domestica HOM05D000162 ORTHO05D000090 4.5e-06 57.0 82 40.2
vmacro08467 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 4.5e-06 57.0 89 33.7
CSS0005197 Camellia sinensis var. sinensis HOM05D000162 ORTHO05D000090 5.9e-06 56.6 47 53.2
CSS0009041 Camellia sinensis var. sinensis HOM05D000162 ORTHO05D000090 5.9e-06 56.6 47 53.2
FAN05G4021 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.9e-06 56.6 88 55.7
RcHm_v2.0_Chr5g0074961 Rosa chinensis HOM05D009709 ORTHO05D003288 5.9e-06 56.6 31 93.5
vmacro08419 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 5.9e-06 56.6 86 36.0
ECA232G4999 Erigeron canadensis HOM05D000162 ORTHO05D000090 7.7e-06 56.2 110 31.8
FvH4_3g38931 Fragaria vesca HOM05D000162 ORTHO05D000090 7.7e-06 56.2 88 54.5
FAN11G0438 Fragaria x ananassa HOM05D000027 ORTHO05D001163 7.7e-06 56.2 62 48.4
vmacro08416 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 7.7e-06 56.2 88 47.7


User provided reference genes

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