Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.3e-310 1068.9 545 100.0
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 1.7e-299 1031.9 545 96.0
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.6e-295 1018.1 560 93.0
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.2e-279 966.1 545 91.4
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.6e-276 955.7 583 86.1
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.8e-238 828.2 459 91.9
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 3.2e-229 798.5 542 76.4
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 1.9e-226 789.3 544 75.9
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 9.3e-205 717.2 530 70.0
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 5.1e-203 711.4 540 68.7
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.1e-200 703.7 534 66.9
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 7.2e-197 691.0 545 66.2
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.8e-193 679.1 530 66.8
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 4.8e-193 678.3 548 65.1
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 1.1e-192 677.2 546 65.0
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.5e-191 673.3 536 64.9
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 4.5e-191 671.8 520 65.8
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 7.7e-191 671.0 533 65.9
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.0e-190 670.6 545 65.1
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 1.6e-188 663.3 548 64.2
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 8.0e-188 661.0 534 64.0
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.0e-187 660.6 553 62.4
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 1.4e-187 660.2 610 58.5
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.1e-186 657.1 530 64.5
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 1.7e-185 653.3 531 63.3
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 2.8e-185 652.5 527 63.6
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 3.7e-185 652.1 531 63.1
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 6.3e-185 651.4 527 64.5
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.1e-184 650.6 552 62.0
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 7.0e-184 647.9 531 62.5
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 9.1e-184 647.5 531 62.9
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 2.0e-183 646.4 526 65.0
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 1.3e-182 643.7 524 63.4
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 1.7e-182 643.3 546 62.5
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.8e-182 642.1 546 62.5
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 1.9e-181 639.8 537 62.2
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.5e-181 639.4 497 65.4
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 4.2e-181 638.6 542 62.2
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 1.6e-180 636.7 524 63.9
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 6.1e-180 634.8 547 60.9
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 6.1e-180 634.8 532 60.7
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 6.1e-180 634.8 514 65.6
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 1.0e-179 634.0 545 62.6
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 3.0e-179 632.5 531 61.6
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 4.0e-179 632.1 532 63.5
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 4.0e-179 632.1 532 63.3
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 8.8e-179 630.9 531 62.3
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.2e-178 630.6 542 61.4
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.5e-178 630.2 548 62.6
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 3.3e-178 629.0 535 63.7
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 9.7e-178 627.5 548 62.4
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 9.7e-178 627.5 511 64.2
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.1e-176 624.0 542 62.4
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 1.4e-176 623.6 532 62.6
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.8e-176 623.2 539 62.3
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 2.0e-175 619.8 505 64.0
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 6.5e-174 614.8 518 62.5
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 6.5e-174 614.8 485 64.7
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 5.5e-173 611.7 526 61.8
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 7.2e-173 611.3 501 64.9
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 1.4e-171 607.1 503 63.8
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 5.7e-170 601.7 511 62.2
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 9.8e-170 600.9 534 58.6
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.1e-168 597.4 541 60.1
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.9e-167 591.7 457 65.9
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 1.0e-166 590.9 476 64.9
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 5.0e-166 588.6 528 60.4
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 2.1e-164 583.2 488 62.9
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 2.8e-164 582.8 488 63.1
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 3.6e-164 582.4 525 59.4
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 4.0e-163 578.9 508 63.0
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 2.8e-161 572.8 540 57.6
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 6.6e-158 561.6 457 63.2
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 8.6e-158 561.2 507 58.6
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.2e-156 557.4 487 62.4
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 8.9e-155 551.2 544 53.7
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 1.1e-152 544.3 472 62.1
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.6e-151 538.9 509 59.5
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.1e-147 527.7 423 64.8
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 8.9e-147 524.6 418 65.1
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 1.3e-145 520.8 443 63.2
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 4.9e-145 518.8 514 53.3
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 4.9e-145 518.8 436 63.5
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 8.3e-145 518.1 548 53.1
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.3e-142 510.8 435 62.3
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.3e-142 510.0 431 62.4
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 6.6e-142 508.4 474 57.2
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 1.1e-139 501.1 420 64.3
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 5.8e-138 495.4 513 55.0
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 2.4e-136 490.0 591 50.4
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 7.1e-136 488.4 525 51.8
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.3e-134 484.2 386 65.8
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 2.1e-132 476.9 584 48.8
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 6.4e-129 465.3 458 53.3
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 1.1e-128 464.5 421 59.1
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.2e-127 461.1 492 52.0
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 7.8e-127 458.4 495 53.9
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 6.2e-124 448.7 445 52.4
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 3.1e-123 446.4 492 52.8
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.2e-114 417.9 415 57.1
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.4e-112 411.0 405 56.3
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 7.1e-112 408.7 518 44.2
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 9.3e-112 408.3 389 57.8
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 6.0e-111 405.6 474 45.8
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 1.8e-110 404.1 388 57.0
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.3e-99 365.9 313 61.3
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.3e-97 361.3 506 41.3
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 1.6e-95 354.4 303 63.0
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.0e-90 337.4 335 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 4.6e-87 326.2 440 41.1
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 6.3e-84 315.8 323 54.8
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 2.5e-80 303.9 252 64.3
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 6.3e-76 289.3 212 65.1
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 2.0e-74 284.3 383 46.2
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 8.2e-68 262.3 317 49.8
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 6.1e-63 246.1 183 69.4
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.3e-62 244.2 204 59.8
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 3.7e-60 236.9 425 36.0
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.9e-57 227.3 462 35.3
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.2e-55 221.9 194 62.9
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 3.5e-50 203.8 174 60.9
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 1.3e-49 201.8 658 28.0
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 2.9e-49 200.7 216 53.2
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.2e-47 195.3 198 51.5
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 7.3e-40 169.5 207 46.9
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 1.8e-38 164.9 467 29.3
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 2.3e-38 164.5 95 88.4
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 1.1e-32 145.6 160 53.1
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 3.3e-32 144.1 185 45.4
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 3.1e-30 137.5 163 46.0
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 4.4e-29 133.7 151 47.7
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 4.4e-29 133.7 151 47.7
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 7.5e-29 132.9 97 68.0
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 3.7e-28 130.6 110 57.3
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 3.2e-27 127.5 125 50.4
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 4.6e-26 123.6 110 55.5
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.9e-24 118.2 78 61.5
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 3.3e-24 117.5 510 26.3
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.2e-23 115.5 86 64.0
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 7.6e-21 106.3 111 52.3
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.6e-18 97.1 131 42.0
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.8e-18 96.3 110 56.4
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 1.0e-17 95.9 57 82.5
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 6.8e-14 83.2 80 57.5
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 3.2e-11 74.3 67 61.2
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.4e-11 73.6 63 60.3
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.4e-11 73.6 63 60.3
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 7.1e-11 73.2 54 59.3
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 1.7e-09 68.6 71 56.3
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 8.7e-09 66.2 245 28.6
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 5.6e-08 63.5 190 32.6
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.8e-06 58.5 55 52.7


User provided reference genes

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