Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0074191 Rosa chinensis HOM05D009519 ORTHO05D010307 2.3e-55 219.2 160 100.0
RcHm_v2.0_Chr5g0074231 Rosa chinensis HOM05D009519 ORTHO05D010307 2.4e-23 112.8 63 81.0
RcHm_v2.0_Chr5g0069591 Rosa chinensis HOM05D009519 ORTHO05D010307 1.6e-19 100.1 57 84.2
FAN25G2503 Fragaria x ananassa HOM05D009519 ORTHO05D010307 2.5e-17 92.8 60 68.3
FvH4_3g40100 Fragaria vesca HOM05D010115 ORTHO05D010307 1.6e-16 90.1 135 68.1
FAN25G3245 Fragaria x ananassa HOM05D009519 ORTHO05D010307 2.1e-16 89.7 157 66.9
RcHm_v2.0_Chr7g0226411 Rosa chinensis HOM05D009519 ORTHO05D010307 6.9e-15 84.7 67 64.2
MD03G1106100 Malus domestica HOM05D031184 ORTHO05D010307 3.8e-13 79.0 66 57.6
RcHm_v2.0_Chr5g0076261 Rosa chinensis HOM05D009519 ORTHO05D010307 6.5e-13 78.2 49 71.4
FAN05G3453 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.1e-11 73.2 66 57.6
FAN11G1048 Fragaria x ananassa HOM05D010115 ORTHO05D010307 2.1e-11 73.2 46 69.6
RcHm_v2.0_Chr5g0075791 Rosa chinensis HOM05D000162 ORTHO05D003288 2.1e-11 73.2 129 47.3
FvH4_3g42600 Fragaria vesca HOM05D009519 ORTHO05D010307 6.1e-11 71.6 48 68.8
FAN25G0683 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.3e-10 70.5 44 72.7
RcHm_v2.0_Chr5g0076251 Rosa chinensis HOM05D009519 ORTHO05D010307 2.3e-10 69.7 38 81.6
arahy.Tifrunner.gnm1.ann1.3K1SXW Arachis hypogaea HOM05D000162 ORTHO05D000090 3.9e-10 68.9 62 54.8
RcHm_v2.0_Chr5g0078551 Rosa chinensis HOM05D009519 ORTHO05D010307 8.7e-10 67.8 47 63.8
RcHm_v2.0_Chr5g0078811 Rosa chinensis HOM05D009519 ORTHO05D010307 1.1e-09 67.4 47 61.7
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 1.3e-08 63.9 152 25.7
Potri.008G044050 Populus trichocarpa HOM05D005362 ORTHO05D031602 1.3e-08 63.9 48 50.0
Rhsim12G0060500 Rhododendron simsii HOM05D138555 ORTHO05D010307 1.3e-08 63.9 71 42.3
RcHm_v2.0_Chr7g0226421 Rosa chinensis HOM05D009519 ORTHO05D010307 1.3e-08 63.9 37 73.0
RcHm_v2.0_Chr5g0071931 Rosa chinensis HOM05D009519 ORTHO05D010307 2.8e-08 62.8 36 77.8
RcHm_v2.0_Chr5g0072771 Rosa chinensis HOM05D009519 ORTHO05D010307 2.8e-08 62.8 34 79.4
FAN11G1758 Fragaria x ananassa HOM05D004321 ORTHO05D004889 4.8e-08 62.0 52 53.8
Prupe.6G088600 Prunus persica HOM05D009519 ORTHO05D010307 4.8e-08 62.0 38 63.2
RcHm_v2.0_Chr5g0069571 Rosa chinensis HOM05D009709 ORTHO05D010307 6.3e-08 61.6 38 71.1
Manes.07G130500 Manihot esculenta HOM05D000162 ORTHO05D010307 8.2e-08 61.2 46 58.7
PSO732G0362 Papaver somniferum HOM05D010315 ORTHO05D016663 1.1e-07 60.8 66 39.4
VMungo1383G3318 Vigna mungo HOM05D000855 ORTHO05D019456 1.1e-07 60.8 60 45.0
FAN25G1639 Fragaria x ananassa HOM05D010115 ORTHO05D010307 1.8e-07 60.1 36 72.2
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.8e-07 60.1 64 42.2
Nn4g25162 Nelumbo nucifera HOM05D000162 ORTHO05D010307 1.8e-07 60.1 55 47.3
Dinv29903 Davidia involucrata HOM05D013428 ORTHO05D015803 3.1e-07 59.3 67 47.8
FAN21G2702 Fragaria x ananassa HOM05D009519 ORTHO05D010307 3.1e-07 59.3 52 51.9
Prupe.6G091500 Prunus persica HOM05D009519 ORTHO05D010307 3.1e-07 59.3 38 63.2
CSS0011148 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 4.1e-07 58.9 50 44.0
FvH4_3g36280 Fragaria vesca HOM05D009519 ORTHO05D010307 4.1e-07 58.9 43 65.1
Gorai.013G000300 Gossypium raimondii HOM05D007063 ORTHO05D008822 6.9e-07 58.2 145 26.9
RcHm_v2.0_Chr5g0078471 Rosa chinensis HOM05D009519 ORTHO05D010307 6.9e-07 58.2 34 67.6
Potri.019G062332 Populus trichocarpa HOM05D024593 ORTHO05D010307 1.2e-06 57.4 55 49.1
FvH4_3g43330 Fragaria vesca HOM05D009519 ORTHO05D010307 1.5e-06 57.0 34 70.6
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 2.0e-06 56.6 159 30.8
Ah.09g237590 Amaranthus hybridus HOM05D002986 ORTHO05D007611 2.6e-06 56.2 57 52.6
MD03G1113700 Malus domestica HOM05D010115 ORTHO05D010307 2.6e-06 56.2 46 54.3
Peaxi162Scf00099g00032 Petunia axillaris HOM05D002986 ORTHO05D007611 2.6e-06 56.2 55 49.1
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 2.6e-06 56.2 66 42.4
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 3.4e-06 55.8 65 40.0
PSO017G5385 Papaver somniferum HOM05D029812 ORTHO05D016663 3.4e-06 55.8 57 43.9
Dinv20261 Davidia involucrata HOM05D024593 ORTHO05D010307 4.5e-06 55.5 47 55.3
FAN12G1172 Fragaria x ananassa HOM05D002986 ORTHO05D007611 4.5e-06 55.5 63 47.6
Manes.17G093600 Manihot esculenta HOM05D006858 ORTHO05D008767 4.5e-06 55.5 65 38.5
Oeu056521.1 Olea europaea HOM05D002986 ORTHO05D007611 4.5e-06 55.5 53 49.1
Hma1.2p1_1276F.1_g272070 Hydrangea macrophylla HOM05D016049 ORTHO05D012019 5.9e-06 55.1 122 54.9
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 5.9e-06 55.1 70 37.1
SHI05938 Sapria himalayana HOM05D002453 ORTHO05D008746 5.9e-06 55.1 69 42.0
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 7.7e-06 54.7 64 40.6
Gohir.D02G212500 Gossypium hirsutum HOM05D006858 ORTHO05D008767 7.7e-06 54.7 65 36.9
Gorai.005G240500 Gossypium raimondii HOM05D006858 ORTHO05D008767 7.7e-06 54.7 65 36.9
arahy.Tifrunner.gnm1.ann1.8Z4KH7 Arachis hypogaea HOM05D000162 ORTHO05D000090 1.0e-05 54.3 56 44.6
Medtr3g094280 Medicago truncatula HOM05D006503 ORTHO05D008116 1.0e-05 54.3 53 45.3


User provided reference genes

Program Settings