Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0074181 Rosa chinensis HOM05D009709 ORTHO05D003288 1.3e-45 186.0 93 100.0
RcHm_v2.0_Chr5g0075791 Rosa chinensis HOM05D000162 ORTHO05D003288 2.9e-29 131.7 81 80.2
RcHm_v2.0_Chr5g0072871 Rosa chinensis HOM05D009709 ORTHO05D003288 1.7e-26 122.5 77 85.7
RcHm_v2.0_Chr5g0074961 Rosa chinensis HOM05D009709 ORTHO05D003288 6.6e-26 120.6 77 77.9
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 4.3e-25 117.9 91 64.8
Prupe.6G195700 Prunus persica HOM05D009709 ORTHO05D003288 1.4e-20 102.8 89 64.0
RcHm_v2.0_Chr5g0078611 Rosa chinensis HOM05D009709 ORTHO05D003288 3.2e-20 101.7 71 74.6
RcHm_v2.0_Chr5g0069571 Rosa chinensis HOM05D009709 ORTHO05D010307 1.6e-19 99.4 69 75.4
FAN11G2462 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.7e-18 95.9 82 61.0
FAN21G2825 Fragaria x ananassa HOM05D000162 ORTHO05D003288 5.1e-18 94.4 72 66.7
FvH4_3g38471 Fragaria vesca HOM05D009709 ORTHO05D003288 8.6e-18 93.6 91 61.5
FvH4_3g31580 Fragaria vesca HOM05D009709 ORTHO05D003288 1.5e-17 92.8 72 66.7
FvH4_3g39650 Fragaria vesca HOM05D000162 ORTHO05D003288 5.6e-17 90.9 80 61.2
FAN21G0792 Fragaria x ananassa HOM05D000027 ORTHO05D001163 7.3e-17 90.5 70 65.7
FAN21G0960 Fragaria x ananassa HOM05D000027 ORTHO05D001163 7.3e-17 90.5 70 65.7
FAN18G0982 Fragaria x ananassa HOM05D009709 ORTHO05D003288 4.7e-16 87.8 71 66.2
FAN16G3455 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.4e-15 86.3 75 64.0
FAN21G1710 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.8e-15 84.0 92 53.3
FAN25G2751 Fragaria x ananassa HOM05D009709 ORTHO05D003288 6.8e-15 84.0 71 64.8
FAN25G3795 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.2e-14 83.2 77 66.2
FAN16G2807 Fragaria x ananassa HOM05D009709 ORTHO05D003288 9.9e-14 80.1 67 65.7
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.9e-12 75.9 90 43.3
AUR62000666 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.2e-11 73.2 89 41.6
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 1.6e-11 72.8 88 44.3
AUR62000649 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.6e-11 72.8 89 41.6
Potri.005G046050 Populus trichocarpa HOM05D009709 ORTHO05D003288 1.6e-11 72.8 78 46.2
QL03p013262 Quercus lobata HOM05D000162 ORTHO05D000090 1.6e-11 72.8 72 52.8
vmacro13801 Vaccinium macrocarpon HOM05D026694 ORTHO05D003288 2.7e-11 72.0 78 44.9
AUR62005214 Chenopodium quinoa HOM05D000162 ORTHO05D003288 7.8e-11 70.5 76 43.4
EL10Ac4g09866 Beta vulgaris HOM05D000162 ORTHO05D000090 1.0e-10 70.1 84 41.7
AUR62005166 Chenopodium quinoa HOM05D001413 ORTHO05D003288 1.0e-10 70.1 90 40.0
Peaxi162Scf00342g00098 Petunia axillaris HOM05D011051 ORTHO05D003288 1.3e-10 69.7 78 41.0
FAN07G0501 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.7e-10 69.3 60 60.0
MD03G1101000 Malus domestica HOM05D000162 ORTHO05D003288 1.7e-10 69.3 81 49.4
AUR62000678 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.3e-10 68.9 89 41.6
FAN11G1048 Fragaria x ananassa HOM05D010115 ORTHO05D010307 2.3e-10 68.9 80 50.0
RcHm_v2.0_Chr5g0073761 Rosa chinensis HOM05D000162 ORTHO05D000090 3.0e-10 68.6 49 79.6
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 5.1e-10 67.8 89 43.8
AUR62005260 Chenopodium quinoa HOM05D000162 ORTHO05D003288 8.7e-10 67.0 89 38.2
AUR62000690 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.1e-09 66.6 83 39.8
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.1e-09 66.6 89 38.2
FvH4_3g37111 Fragaria vesca HOM05D009709 ORTHO05D003288 1.1e-09 66.6 59 59.3
TAR362G0788 Trochodendron aralioides HOM05D000162 ORTHO05D003288 1.1e-09 66.6 85 42.4
Sabra02G0034700 Salix brachista HOM05D017826 ORTHO05D003288 1.5e-09 66.2 78 44.9
AUR62000650 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.9e-09 65.9 89 39.3
AUR62000665 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.9e-09 65.9 82 41.5
AUR62000680 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.9e-09 65.9 89 38.2
arahy.Tifrunner.gnm1.ann1.M2HM0V Arachis hypogaea HOM05D018308 ORTHO05D003288 2.5e-09 65.5 90 43.3
CSS0026088 Camellia sinensis var. sinensis HOM05D009709 ORTHO05D003288 2.5e-09 65.5 70 50.0
AUR62000710 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.3e-09 65.1 89 37.1
BcaC04g20649 Brassica carinata HOM05D000162 ORTHO05D003288 4.3e-09 64.7 80 43.8
BolC9t56985H Brassica oleracea HOM05D000162 ORTHO05D003288 4.3e-09 64.7 80 43.8
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 4.3e-09 64.7 85 41.2
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 5.6e-09 64.3 85 42.4
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 5.6e-09 64.3 85 42.4
C09p41050 Brassica napus HOM05D000162 ORTHO05D003288 7.3e-09 63.9 80 42.5
PSO017G0246 Papaver somniferum HOM05D015516 ORTHO05D020960 7.3e-09 63.9 70 47.1
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 9.6e-09 63.5 80 42.5
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 1.3e-08 63.2 80 45.0
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 1.3e-08 63.2 80 45.0
AUR62006890 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.3e-08 63.2 90 41.1
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 2.1e-08 62.4 80 45.0
AUR62017647 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.1e-08 62.4 89 37.1
Gorai.009G378000 Gossypium raimondii HOM05D009709 ORTHO05D003288 2.8e-08 62.0 75 44.0
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 3.6e-08 61.6 76 44.7
Rhsim02G0051600 Rhododendron simsii HOM05D026694 ORTHO05D003288 3.6e-08 61.6 89 36.0
AUR62005276 Chenopodium quinoa HOM05D000162 ORTHO05D000090 4.8e-08 61.2 81 40.7
arahy.Tifrunner.gnm1.ann1.KQ42YR Arachis hypogaea HOM05D018308 ORTHO05D003288 6.2e-08 60.8 69 46.4
Migut.F00854 Erythranthe guttata HOM05D000162 ORTHO05D000090 1.1e-07 60.1 86 39.5
AUR62005303 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.4e-07 59.7 81 39.5
MD03G1113500 Malus domestica HOM05D009709 ORTHO05D003288 1.4e-07 59.7 38 71.1
QL03p009030 Quercus lobata HOM05D000162 ORTHO05D000090 1.4e-07 59.7 73 42.5
HanXRQChr13g0420261 Helianthus annuus HOM05D022346 ORTHO05D003288 2.4e-07 58.9 88 34.1
Migut.G01062 Erythranthe guttata HOM05D040971 ORTHO05D003288 3.1e-07 58.5 85 37.6
Dinv20260 Davidia involucrata HOM05D010002 ORTHO05D003288 5.3e-07 57.8 62 50.0
FAN21G0676 Fragaria x ananassa HOM05D048608 ORTHO05D003288 5.3e-07 57.8 69 52.2
RcHm_v2.0_Chr5g0027691 Rosa chinensis HOM05D009709 ORTHO05D003288 5.3e-07 57.8 52 61.5
RcHm_v2.0_Chr5g0073691 Rosa chinensis HOM05D000162 ORTHO05D000090 6.9e-07 57.4 33 97.0
EL10Ac4g09525 Beta vulgaris HOM05D000162 ORTHO05D000090 1.2e-06 56.6 78 41.0
EL10Ac4g09526 Beta vulgaris HOM05D000162 ORTHO05D003288 1.2e-06 56.6 78 41.0
EL10Ac4g09814 Beta vulgaris HOM05D000162 ORTHO05D000090 1.2e-06 56.6 74 40.5
BolC1t04080H Brassica oleracea HOM05D000162 ORTHO05D003288 1.2e-06 56.6 88 35.2
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-06 56.6 71 39.4
arahy.Tifrunner.gnm1.ann1.90GDKS Arachis hypogaea HOM05D008100 ORTHO05D009715 1.5e-06 56.2 59 47.5
arahy.Tifrunner.gnm1.ann1.U8UX16 Arachis hypogaea HOM05D000239 ORTHO05D009715 1.5e-06 56.2 57 47.4
AUR62005284 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.5e-06 56.2 64 39.1
BolC8t52230H Brassica oleracea HOM05D000162 ORTHO05D003288 2.0e-06 55.8 64 43.8
FAN16G2854 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.0e-06 55.8 58 51.7
FAN25G2428 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.0e-06 55.8 69 49.3
SalBow3G2074 Salvia bowleyana HOM05D000162 ORTHO05D000090 2.0e-06 55.8 90 36.7
FAN11G0997 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.6e-06 55.5 41 75.6
FAN25G0338 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.6e-06 55.5 41 75.6
AL1G23620 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 4.4e-06 54.7 71 43.7
C08p15550 Brassica napus HOM05D000162 ORTHO05D000090 4.4e-06 54.7 77 40.3
BolC8t49183H Brassica oleracea HOM05D000162 ORTHO05D000090 5.8e-06 54.3 77 40.3
CDE05G1884 Ceratophyllum demersum HOM05D006503 ORTHO05D008116 5.8e-06 54.3 67 38.8
AUR62000691 Chenopodium quinoa HOM05D000162 ORTHO05D003288 5.8e-06 54.3 82 34.1
Ciclev10024595m.g Citrus clementina HOM05D007763 ORTHO05D009537 5.8e-06 54.3 72 33.3
Medtr1g091880 Medicago truncatula HOM05D008100 ORTHO05D009715 5.8e-06 54.3 59 47.5
Rhsim02G0033800 Rhododendron simsii HOM05D026694 ORTHO05D003288 5.8e-06 54.3 79 39.2
vmacro13717 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 5.8e-06 54.3 67 38.8
AUR62005167 Chenopodium quinoa HOM05D000162 ORTHO05D000090 7.6e-06 53.9 78 35.9
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 7.6e-06 53.9 71 38.0
RcHm_v2.0_Chr5g0073711 Rosa chinensis HOM05D010115 ORTHO05D012862 7.6e-06 53.9 77 44.2
SalBow8G5030 Salvia bowleyana HOM05D022251 ORTHO05D003288 7.6e-06 53.9 70 41.4


User provided reference genes

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