Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 1.9e-69 265.8 136 100.0
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.4e-63 244.6 149 87.2
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.8e-55 217.6 162 75.3
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.8e-54 214.9 172 71.5
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 1.7e-51 206.1 145 78.6
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.9e-50 202.6 148 71.6
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 4.3e-50 201.4 148 70.9
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 9.6e-50 200.3 158 68.4
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 9.6e-50 200.3 148 70.3
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 2.1e-49 199.1 162 67.3
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 4.8e-49 198.0 166 65.1
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 1.4e-48 196.4 158 68.4
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.8e-48 196.1 158 66.5
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 2.4e-48 195.7 164 65.2
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.4e-48 195.7 157 66.9
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 3.1e-48 195.3 145 71.7
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 4.0e-48 194.9 156 67.3
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 5.3e-48 194.5 144 69.4
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 6.9e-48 194.1 158 67.1
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 9.0e-48 193.7 156 67.3
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.2e-47 193.4 156 67.3
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.5e-47 193.0 146 69.2
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 1.5e-47 193.0 153 68.0
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 2.6e-47 192.2 158 65.8
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 3.4e-47 191.8 174 61.5
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 7.6e-47 190.7 157 65.6
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 9.9e-47 190.3 155 67.1
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.2e-46 189.1 148 67.6
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 3.8e-46 188.3 151 66.9
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 4.9e-46 188.0 177 59.9
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 4.9e-46 188.0 181 58.6
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.1e-45 186.8 145 69.0
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.1e-45 186.8 192 56.2
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 1.1e-45 186.8 164 63.4
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 1.1e-45 186.8 158 65.2
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.4e-45 186.4 167 61.7
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 2.4e-45 185.7 146 62.3
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.2e-45 185.3 148 65.5
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 3.2e-45 185.3 156 66.7
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 3.2e-45 185.3 168 61.9
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 5.4e-45 184.5 168 61.3
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 1.6e-44 183.0 177 57.1
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 2.7e-44 182.2 175 58.9
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 3.5e-44 181.8 152 64.5
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 3.5e-44 181.8 153 66.0
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 6.0e-44 181.0 170 60.0
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 7.9e-44 180.6 152 63.2
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 7.9e-44 180.6 152 63.2
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 7.9e-44 180.6 152 63.2
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 7.9e-44 180.6 152 63.2
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 7.9e-44 180.6 153 65.4
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.0e-43 180.3 152 63.2
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 1.0e-43 180.3 155 61.9
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 1.0e-43 180.3 178 58.4
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.3e-43 179.9 173 57.8
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.3e-43 179.9 177 57.6
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.3e-43 179.9 156 61.5
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.8e-43 179.5 152 62.5
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 2.3e-43 179.1 148 68.2
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 2.3e-43 179.1 152 62.5
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 2.3e-43 179.1 152 63.8
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 3.0e-43 178.7 172 58.7
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 1.1e-42 176.8 148 68.9
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 2.5e-42 175.6 161 59.6
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 7.4e-42 174.1 177 55.9
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.6e-41 172.9 152 61.2
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 3.7e-41 171.8 144 63.9
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.1e-40 170.2 199 50.3
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 1.1e-40 170.2 148 64.2
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 3.1e-40 168.7 153 61.4
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 6.9e-40 167.5 121 80.2
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 1.2e-39 166.8 188 52.1
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 3.4e-39 165.2 207 48.3
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 9.9e-39 163.7 142 63.4
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 1.3e-38 163.3 144 61.8
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 6.4e-38 161.0 143 61.5
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.4e-37 159.8 216 45.4
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 1.9e-37 159.5 161 55.9
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 7.1e-37 157.5 175 52.6
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 9.3e-37 157.1 176 52.8
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 1.6e-36 156.4 162 57.4
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 3.5e-36 155.2 160 57.5
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 3.5e-36 155.2 158 54.4
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 4.6e-36 154.8 155 58.1
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 6.0e-36 154.5 110 75.5
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 6.0e-36 154.5 148 59.5
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.0e-35 153.7 151 54.3
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 2.3e-35 152.5 157 54.8
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.0e-35 152.1 152 52.0
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 3.9e-35 151.8 112 74.1
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 6.7e-35 151.0 141 58.2
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.9e-34 149.4 111 72.1
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 3.3e-34 148.7 165 52.7
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 5.6e-34 147.9 121 65.3
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 7.4e-34 147.5 110 71.8
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 7.4e-34 147.5 171 53.2
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 9.6e-34 147.1 110 69.1
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 3.7e-33 145.2 109 72.5
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 3.7e-33 145.2 112 71.4
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 3.7e-33 145.2 112 69.6
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 6.2e-33 144.4 112 68.8
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.4e-32 143.3 145 56.6
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.8e-32 142.9 125 63.2
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 5.3e-32 141.4 112 67.9
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 6.9e-32 141.0 144 56.9
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 2.0e-31 139.4 144 53.5
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 2.6e-31 139.0 110 68.2
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 3.4e-31 138.7 123 61.8
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 5.8e-31 137.9 156 50.0
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 5.8e-31 137.9 112 68.8
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 7.6e-31 137.5 155 51.0
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 1.0e-30 137.1 152 53.3
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.3e-30 136.7 123 60.2
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 2.2e-30 136.0 136 58.1
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.9e-30 134.8 138 52.9
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 4.9e-30 134.8 127 59.8
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.9e-29 132.9 109 65.1
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 4.2e-29 131.7 172 45.3
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 7.1e-29 131.0 112 63.4
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 7.1e-29 131.0 110 63.6
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.3e-27 126.7 108 64.8
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 2.3e-27 125.9 135 57.8
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 6.7e-27 124.4 152 48.0
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 6.7e-27 124.4 123 56.9
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.9e-26 122.9 162 45.7
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 7.4e-26 120.9 100 66.0
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 9.7e-26 120.6 150 48.7
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 4.8e-25 118.2 124 61.3
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.8e-25 118.2 124 61.3
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.8e-24 116.3 113 52.2
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 4.1e-24 115.2 146 47.3
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.0e-23 112.8 96 62.5
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.0e-23 112.8 69 75.4
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.9e-22 109.0 112 50.9
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.4e-21 106.7 139 45.3
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.8e-19 99.8 140 47.1
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.8e-17 92.4 68 58.8
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.1e-16 90.5 79 55.7
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 2.6e-15 85.9 63 60.3
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 5.9e-15 84.7 70 70.0
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.0e-14 84.0 69 68.1
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 1.3e-14 83.6 80 61.2
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 2.5e-13 79.3 70 65.7
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.0e-11 73.9 71 59.2
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.8e-11 73.2 48 72.9
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.3e-11 72.8 70 60.0
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 2.0e-10 69.7 36 88.9
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.7e-09 66.6 65 47.7
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 2.2e-09 66.2 145 33.8
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 1.4e-08 63.5 61 57.4
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 3.1e-08 62.4 133 37.6
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.5e-07 60.1 35 71.4
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 5.9e-07 58.2 36 72.2
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 5.9e-07 58.2 36 72.2
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.0e-06 57.4 36 69.4
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.3e-06 57.0 35 71.4
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 2.2e-06 56.2 62 58.1
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.8e-06 55.5 36 69.4
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 3.8e-06 55.5 36 69.4
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 8.5e-06 54.3 35 71.4
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 8.5e-06 54.3 36 66.7


User provided reference genes

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