Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 0.0e+00 1422.9 724 100.0
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 0.0e+00 1360.9 725 94.6
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 0.0e+00 1357.4 725 94.3
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 0.0e+00 1356.3 725 94.1
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 0.0e+00 1355.1 725 94.2
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 0.0e+00 1312.0 725 92.0
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 0.0e+00 1227.6 726 85.0
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 0.0e+00 1194.5 726 83.1
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 0.0e+00 1134.8 729 78.5
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 0.0e+00 1133.6 730 77.3
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 0.0e+00 1132.1 725 77.1
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 0.0e+00 1124.8 728 77.9
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 0.0e+00 1123.2 726 77.4
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 0.0e+00 1114.4 726 76.0
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 0.0e+00 1109.4 726 75.8
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 0.0e+00 1104.7 726 75.6
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 0.0e+00 1098.2 726 76.9
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 0.0e+00 1096.3 725 74.9
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 0.0e+00 1094.3 718 74.9
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 0.0e+00 1091.6 725 75.4
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 0.0e+00 1088.6 726 74.9
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 0.0e+00 1086.2 727 74.6
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 0.0e+00 1085.9 727 75.4
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 0.0e+00 1083.2 837 67.1
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 0.0e+00 1078.5 699 77.7
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 0.0e+00 1076.6 726 74.4
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 0.0e+00 1075.8 728 73.8
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 5.9e-311 1070.5 717 73.1
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 7.8e-308 1060.1 726 73.4
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 1.0e-307 1059.7 726 74.0
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 1.2e-305 1052.7 726 73.3
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 1.4e-304 1049.3 732 73.0
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 3.4e-303 1044.6 736 72.6
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 5.8e-303 1043.9 731 71.4
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 1.7e-302 1042.3 726 73.3
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 3.0e-299 1031.6 716 71.8
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 2.8e-297 1025.0 724 71.5
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 2.4e-296 1021.9 726 70.8
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 5.3e-296 1020.8 795 67.8
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 5.8e-295 1017.3 726 70.2
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 9.9e-295 1016.5 729 70.1
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 1.1e-293 1013.1 722 71.5
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 9.3e-293 1010.0 722 70.8
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 1.2e-292 1009.6 733 70.9
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 1.5e-290 1002.7 731 70.2
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 3.6e-289 998.0 731 71.0
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 8.1e-289 996.9 621 79.2
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 2.6e-287 991.9 722 69.8
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 3.4e-287 991.5 722 68.3
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 7.6e-287 990.3 720 69.9
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 1.3e-286 989.6 725 69.4
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 2.2e-286 988.8 722 67.7
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 2.9e-286 988.4 724 67.3
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 2.4e-285 985.3 726 67.8
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 3.5e-284 981.5 726 66.9
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 3.9e-283 978.0 720 67.5
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 1.5e-282 976.1 734 68.3
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 6.2e-281 970.7 725 67.9
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 4.5e-279 964.5 728 68.4
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 5.8e-279 964.1 725 67.9
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 7.1e-277 957.2 729 67.1
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 4.6e-276 954.5 713 66.8
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 6.7e-275 950.7 726 65.0
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 1.2e-271 939.9 729 66.4
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 4.9e-270 934.5 725 64.8
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 6.1e-268 927.5 722 64.3
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 1.1e-266 923.3 723 63.8
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 1.1e-266 923.3 723 63.8
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 1.1e-266 923.3 723 63.8
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 2.8e-265 918.7 724 63.8
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 2.8e-265 918.7 725 64.3
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 6.3e-265 917.5 723 63.8
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 8.2e-265 917.1 724 63.7
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 9.0e-264 913.7 726 64.3
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 1.2e-263 913.3 725 63.7
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 1.1e-261 906.7 725 63.2
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 4.6e-260 901.4 643 70.8
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 2.7e-244 849.0 726 60.5
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.0e-243 847.0 726 60.2
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 3.0e-235 818.9 729 59.3
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 3.5e-223 778.9 665 59.4
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.2e-212 743.8 479 75.8
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 1.6e-212 743.4 590 65.1
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 4.9e-201 705.3 714 53.9
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.7e-191 672.9 670 55.1
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 3.0e-190 669.5 668 54.0
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 1.3e-185 654.1 466 71.0
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 2.7e-183 646.4 665 51.6
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 1.9e-181 640.2 439 75.9
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 7.3e-181 638.3 671 50.7
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 8.4e-177 624.8 671 50.5
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 4.6e-175 619.0 595 54.5
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.5e-154 550.8 430 62.1
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 5.0e-153 545.8 505 57.6
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 2.3e-150 537.0 666 44.3
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 5.1e-150 535.8 428 64.0
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.9e-145 520.0 376 67.8
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 9.4e-136 488.4 391 61.4
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 2.0e-130 470.7 662 39.6
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 8.2e-124 448.7 479 52.2
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 4.0e-118 429.9 305 69.2
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 1.7e-116 424.5 339 65.2
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 2.4e-115 420.6 394 56.6
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.4e-115 420.6 327 69.1
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 2.3e-110 404.1 308 68.2
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 4.5e-106 389.8 298 66.8
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 2.9e-100 370.5 575 39.7
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 3.9e-97 360.1 230 78.7
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 2.8e-95 354.0 266 68.4
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 2.3e-81 307.8 237 63.7
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 6.2e-71 273.1 206 62.1
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.1e-56 225.7 155 74.8
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 2.1e-55 221.5 163 71.2
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 9.0e-46 189.5 148 58.8
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 6.0e-42 176.8 137 62.8
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 8.5e-36 156.4 716 26.0
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 6.9e-22 110.2 71 76.1
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 8.5e-20 103.2 103 50.5
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 2.7e-18 98.2 69 68.1
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 6.3e-15 87.0 683 22.4
Actinidia23826 Actinidia chinensis HOM05D006472 ORTHO05D008222 4.2e-11 74.3 69 65.2
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 1.4e-09 69.3 49 59.2
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 1.7e-07 62.4 44 68.2


User provided reference genes

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