Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0073621 Rosa chinensis HOM05D010052 ORTHO05D010666 9.4e-130 466.8 233 100.0
FAN04G3011 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.1e-90 337.0 231 70.6
FAN18G3409 Fragaria x ananassa HOM05D010052 ORTHO05D010666 6.8e-88 327.8 231 68.8
RcHm_v2.0_Chr7g0211331 Rosa chinensis HOM05D010052 ORTHO05D010666 8.9e-88 327.4 231 69.3
FvH4_5g22901 Fragaria vesca HOM05D010052 ORTHO05D010666 2.0e-87 326.2 231 68.8
FAN13G1417 Fragaria x ananassa HOM05D010052 ORTHO05D010666 4.6e-84 315.1 221 69.7
FAN18G4184 Fragaria x ananassa HOM05D003158 ORTHO05D003560 1.3e-83 313.5 219 71.2
FAN11G3829 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.3e-78 297.0 231 66.2
FvH4_3g40821 Fragaria vesca HOM05D010052 ORTHO05D010666 3.8e-78 295.4 231 65.8
RcHm_v2.0_Chr7g0211341 Rosa chinensis HOM05D010052 ORTHO05D010666 4.2e-69 265.4 201 67.7
RcHm_v2.0_Chr3g0475771 Rosa chinensis HOM05D010052 ORTHO05D010666 7.1e-53 211.5 215 50.2
MD14G1037800 Malus domestica HOM05D010052 ORTHO05D010666 2.4e-48 196.4 245 42.9
MD14G1037900 Malus domestica HOM05D010052 ORTHO05D010666 2.1e-44 183.3 223 43.0
Prupe.7G096300 Prunus persica HOM05D010052 ORTHO05D010666 6.7e-43 178.3 231 45.9
MD12G1039100 Malus domestica HOM05D010052 ORTHO05D010666 1.4e-40 170.6 237 41.4
Prupe.7G096500 Prunus persica HOM05D010052 ORTHO05D010666 6.9e-40 168.3 180 46.7
Prupe.7G096700 Prunus persica HOM05D010052 ORTHO05D010666 7.2e-37 158.3 171 46.2
MD12G1087900 Malus domestica HOM05D010052 ORTHO05D010666 2.0e-26 123.6 252 33.3
Prupe.7G048100 Prunus persica HOM05D010052 ORTHO05D010666 3.7e-25 119.4 253 32.8
FvH4_6g24970 Fragaria vesca HOM05D010052 ORTHO05D010666 1.2e-23 114.4 258 32.6
FAN09G4754 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.7e-22 110.5 250 33.2
FAN14G1910 Fragaria x ananassa HOM05D010052 ORTHO05D010666 8.5e-22 108.2 231 33.3
MD07G1151300 Malus domestica HOM05D010052 ORTHO05D010666 2.5e-21 106.7 241 30.3
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.7e-17 94.0 183 30.1
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 1.8e-16 90.5 212 28.8
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 3.1e-16 89.7 181 29.3
BcaC06g32916 Brassica carinata HOM05D008136 ORTHO05D002052 1.0e-14 84.7 216 31.0
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 2.9e-14 83.2 190 26.3
BraA03t13990Z Brassica rapa HOM05D008136 ORTHO05D002052 1.9e-13 80.5 189 31.2
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 2.5e-13 80.1 210 25.7
BcaC06g33391 Brassica carinata HOM05D008136 ORTHO05D002052 3.2e-13 79.7 189 31.7
C07p46980 Brassica napus HOM05D008136 ORTHO05D002052 3.2e-13 79.7 189 31.7
BolC7t45215H Brassica oleracea HOM05D008136 ORTHO05D002052 3.2e-13 79.7 189 31.7
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 3.2e-13 79.7 184 28.8
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 3.2e-13 79.7 184 28.8
A03p48880 Brassica napus HOM05D008136 ORTHO05D002052 4.2e-13 79.3 187 31.0
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 5.5e-13 79.0 191 26.7
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 5.5e-13 79.0 204 23.0
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 5.5e-13 79.0 208 26.0
Medtr7g106130 Medicago truncatula HOM05D008136 ORTHO05D002052 7.2e-13 78.6 173 29.5
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 9.4e-13 78.2 183 30.6
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 9.4e-13 78.2 200 27.0
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 9.4e-13 78.2 200 27.0
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 1.2e-12 77.8 171 26.3
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 1.6e-12 77.4 210 29.0
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 1.6e-12 77.4 210 29.0
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 1.6e-12 77.4 210 29.0
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 1.6e-12 77.4 178 29.8
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 2.1e-12 77.0 220 26.4
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.1e-12 77.0 205 27.3
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.7e-12 76.6 215 25.6
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 3.6e-12 76.3 183 25.7
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.6e-12 76.3 222 23.4
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 4.7e-12 75.9 210 29.0
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 4.7e-12 75.9 210 29.0
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 4.7e-12 75.9 188 25.0
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 6.1e-12 75.5 212 28.3
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 6.1e-12 75.5 196 25.0
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 6.1e-12 75.5 219 23.7
Cpa.g.sc104.41 Carica papaya HOM05D015120 ORTHO05D010825 1.0e-11 74.7 226 30.1
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.0e-11 74.7 189 25.4
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 1.0e-11 74.7 209 23.9
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 1.0e-11 74.7 209 23.9
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.0e-11 74.7 158 28.5
CANSAT64G0025 Cannabis sativa HOM05D008136 ORTHO05D002052 1.4e-11 74.3 176 25.0
Gorai.001G124500 Gossypium raimondii HOM05D002687 ORTHO05D002052 1.4e-11 74.3 186 28.0
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 1.8e-11 73.9 190 30.0
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 1.8e-11 73.9 183 26.2
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.8e-11 73.9 212 25.0
Thhalv10010982m.g Eutrema salsugineum HOM05D008136 ORTHO05D002052 2.3e-11 73.6 216 29.2
BraA03t11881Z Brassica rapa HOM05D002687 ORTHO05D002052 3.0e-11 73.2 181 27.1
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 4.0e-11 72.8 220 24.5
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 4.0e-11 72.8 183 27.9
A03p26690 Brassica napus HOM05D002687 ORTHO05D002052 5.2e-11 72.4 209 25.4
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 5.2e-11 72.4 183 25.1
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 5.2e-11 72.4 168 29.2
Carub.0005s1885 Capsella rubella HOM05D008136 ORTHO05D002052 6.7e-11 72.0 219 27.9
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 6.7e-11 72.0 165 29.7
Sp5g09840 Schrenkiella parvula HOM05D008136 ORTHO05D002052 6.7e-11 72.0 213 30.0
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 8.8e-11 71.6 241 26.1
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 8.8e-11 71.6 184 29.3
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 8.8e-11 71.6 202 24.8
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 1.2e-10 71.2 187 28.3
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 1.2e-10 71.2 198 25.8
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 1.2e-10 71.2 198 25.8
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 1.2e-10 71.2 198 25.8
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 1.5e-10 70.9 182 26.4
Duzib170G0577 Durio zibethinus HOM05D002687 ORTHO05D002052 1.5e-10 70.9 186 28.0
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 1.5e-10 70.9 189 27.0
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 1.5e-10 70.9 208 22.6
Thecc.01G085100 Theobroma cacao HOM05D015120 ORTHO05D010666 1.5e-10 70.9 223 27.4
Gohir.A07G112600 Gossypium hirsutum HOM05D002687 ORTHO05D002052 2.0e-10 70.5 186 27.4
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 2.0e-10 70.5 207 26.6
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 2.6e-10 70.1 178 25.8
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 3.3e-10 69.7 222 26.1
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 3.3e-10 69.7 186 25.8
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 3.3e-10 69.7 180 26.7
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 3.3e-10 69.7 222 22.5
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 4.4e-10 69.3 211 28.4
BcaB02g10079 Brassica carinata HOM05D002687 ORTHO05D002052 5.7e-10 68.9 175 27.4
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 5.7e-10 68.9 193 26.4
Haze_19713 Corylus avellana HOM05D008136 ORTHO05D002052 7.5e-10 68.6 241 26.1
MSTRG.17685 Avicennia marina HOM05D002687 ORTHO05D002052 9.7e-10 68.2 185 27.6
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 9.7e-10 68.2 206 23.8
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 9.7e-10 68.2 206 23.8
Gohir.D07G116000 Gossypium hirsutum HOM05D002687 ORTHO05D002052 9.7e-10 68.2 186 26.9
Atru.chr8.1376 Acer truncatum HOM05D015120 ORTHO05D010666 1.7e-09 67.4 215 27.9
Ciclev10013330m.g Citrus clementina HOM05D015120 ORTHO05D010666 1.7e-09 67.4 158 29.7
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 1.7e-09 67.4 183 27.3
arahy.Tifrunner.gnm1.ann1.HURS1T Arachis hypogaea HOM05D002265 ORTHO05D002400 2.2e-09 67.0 172 22.7
COL.COLO4_22662 Corchorus olitorius HOM05D002687 ORTHO05D002052 2.2e-09 67.0 186 28.0
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 2.2e-09 67.0 169 26.6
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 2.2e-09 67.0 192 27.6
Oeu009048.1 Olea europaea HOM05D002687 ORTHO05D002052 2.8e-09 66.6 205 28.8
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 2.8e-09 66.6 188 28.2
Aqoxy1G00678 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 3.7e-09 66.2 185 24.3
AL4G21170 Arabidopsis lyrata HOM05D002687 ORTHO05D002052 3.7e-09 66.2 152 28.9
Glyma.19G199051 Glycine max HOM05D017388 ORTHO05D010666 3.7e-09 66.2 164 30.5
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 3.7e-09 66.2 189 27.0
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 3.7e-09 66.2 212 25.0
AL5G33110 Arabidopsis lyrata HOM05D008136 ORTHO05D002052 4.8e-09 65.9 193 28.0
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 4.8e-09 65.9 181 26.0
TPR.G35568 Trifolium pratense HOM05D017388 ORTHO05D010666 4.8e-09 65.9 238 27.7
AT3G52460 Arabidopsis thaliana HOM05D008136 ORTHO05D002052 6.3e-09 65.5 193 28.0
Lalb_Chr14g0376011 Lupinus albus HOM05D002687 ORTHO05D002052 8.2e-09 65.1 220 23.2
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 8.2e-09 65.1 220 27.7
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 1.1e-08 64.7 171 28.1
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 1.1e-08 64.7 171 28.1
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 1.1e-08 64.7 227 25.1
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 1.4e-08 64.3 196 25.0
Medtr2g087000 Medicago truncatula HOM05D002687 ORTHO05D002052 1.4e-08 64.3 177 24.9
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 1.4e-08 64.3 173 25.4
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 1.4e-08 64.3 189 23.8
THA.LOC104825213 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 1.4e-08 64.3 187 27.3
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 1.8e-08 63.9 183 26.2
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 1.8e-08 63.9 171 28.1
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 1.8e-08 63.9 171 28.1
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 1.8e-08 63.9 170 25.3
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 1.8e-08 63.9 171 28.1
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 1.8e-08 63.9 231 26.0
Psat3g029040 Pisum sativum HOM05D017388 ORTHO05D010666 2.4e-08 63.5 168 30.4
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 3.1e-08 63.2 224 23.2
RcHm_v2.0_Chr2g0124701 Rosa chinensis HOM05D010052 ORTHO05D010666 3.1e-08 63.2 103 36.9
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 4.1e-08 62.8 216 24.1
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 5.3e-08 62.4 211 26.1
CiPaw.09G020400 Carya illinoinensis HOM05D008136 ORTHO05D002052 7.0e-08 62.0 188 24.5
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 7.0e-08 62.0 160 23.8
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 7.0e-08 62.0 185 25.9
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 7.0e-08 62.0 185 25.9
Sp4g10070 Schrenkiella parvula HOM05D002687 ORTHO05D002052 1.2e-07 61.2 152 26.3
BcaB01g03061 Brassica carinata HOM05D002687 ORTHO05D002052 1.6e-07 60.8 217 25.3
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 1.6e-07 60.8 213 22.1
Medtr7g106140 Medicago truncatula HOM05D017388 ORTHO05D010666 1.6e-07 60.8 218 28.0
Phvul.001G195100 Phaseolus vulgaris HOM05D008136 ORTHO05D002052 1.6e-07 60.8 218 26.6
BraA07t29528Z Brassica rapa HOM05D002687 ORTHO05D002052 2.0e-07 60.5 213 22.1
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 2.0e-07 60.5 188 26.1
Lj1g0008918 Lotus japonicus HOM05D017388 ORTHO05D010666 2.0e-07 60.5 221 29.0
BcaB01g03060 Brassica carinata HOM05D002687 ORTHO05D002052 2.7e-07 60.1 190 25.8
Lj1P303T22 Lonicera japonica HOM05D023306 ORTHO05D002052 2.7e-07 60.1 139 27.3
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 2.7e-07 60.1 225 20.9
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 3.5e-07 59.7 231 22.1
CiPaw.14G095600 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.5e-07 59.3 170 25.9
CiPaw.14G095800 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.5e-07 59.3 170 25.9
VMungo1383G0805 Vigna mungo HOM05D017388 ORTHO05D010666 4.5e-07 59.3 161 27.3
Haze_08083 Corylus avellana HOM05D030319 ORTHO05D024879 5.9e-07 58.9 218 27.5
Haze_08086 Corylus avellana HOM05D030319 ORTHO05D024879 5.9e-07 58.9 218 27.5
Thecc.02G128800 Theobroma cacao HOM05D015680 ORTHO05D010825 7.7e-07 58.5 184 26.6
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 1.3e-06 57.8 137 27.7
Ciclev10029176m.g Citrus clementina HOM05D002687 ORTHO05D002052 1.7e-06 57.4 187 25.7
Migut.J00709 Erythranthe guttata HOM05D012176 ORTHO05D002052 1.7e-06 57.4 141 24.1
CiPaw.14G095400 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.9e-06 56.6 208 26.0
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 2.9e-06 56.6 224 23.7
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 2.9e-06 56.6 223 24.2
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 2.9e-06 56.6 184 23.4
Lsat_1_v5_gn_3_114421 Lactuca sativa HOM05D002687 ORTHO05D002052 2.9e-06 56.6 218 24.3
Lj1C294T11 Lonicera japonica HOM05D023306 ORTHO05D012721 5.0e-06 55.8 171 25.1
Haze_23312 Corylus avellana HOM05D002687 ORTHO05D002052 6.5e-06 55.5 200 23.0
FAN05G5055 Fragaria x ananassa HOM05D010052 ORTHO05D010666 6.5e-06 55.5 136 30.9
Prupe.7G096900 Prunus persica HOM05D018155 ORTHO05D020655 8.5e-06 55.1 176 21.0


User provided reference genes

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