Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0073281 Rosa chinensis HOM05D012941 ORTHO05D009651 7.5e-83 310.5 155 100.0
RcHm_v2.0_Chr5g0073301 Rosa chinensis HOM05D012941 ORTHO05D009651 7.5e-83 310.5 155 100.0
RcHm_v2.0_Chr5g0073321 Rosa chinensis HOM05D012941 ORTHO05D009651 7.5e-83 310.5 155 100.0
RcHm_v2.0_Chr5g0073341 Rosa chinensis HOM05D012941 ORTHO05D009651 7.5e-83 310.5 155 100.0
RcHm_v2.0_Chr5g0073261 Rosa chinensis HOM05D012941 ORTHO05D009651 1.4e-81 306.2 155 98.7
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 1.3e-37 160.2 168 57.7
FvH4_3g40551 Fragaria vesca HOM05D012941 ORTHO05D009651 5.5e-25 118.2 122 51.6
FAN11G2253 Fragaria x ananassa HOM05D012941 ORTHO05D009651 1.1e-20 104.0 127 48.0
RcHm_v2.0_Chr5g0073271 Rosa chinensis HOM05D012941 ORTHO05D001803 2.6e-11 72.8 165 32.7
RcHm_v2.0_Chr5g0073331 Rosa chinensis HOM05D012941 ORTHO05D001803 3.4e-11 72.4 154 34.4
RcHm_v2.0_Chr5g0073291 Rosa chinensis HOM05D012941 ORTHO05D001803 4.5e-11 72.0 154 35.1
RcHm_v2.0_Chr5g0073311 Rosa chinensis HOM05D012941 ORTHO05D001803 4.5e-11 72.0 154 35.1
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 2.9e-10 69.3 162 32.1
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 1.4e-09 67.0 129 31.0
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.9e-09 66.6 141 27.7
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 5.5e-09 65.1 110 28.2
MD16G1259400 Malus domestica HOM05D012941 ORTHO05D009651 9.4e-09 64.3 84 44.0
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.1e-08 63.2 117 30.8
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 2.1e-08 63.2 141 34.0
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.8e-07 60.1 120 30.8
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 2.3e-07 59.7 78 35.9
A07p33210 Brassica napus HOM05D001614 ORTHO05D000988 3.9e-07 58.9 83 33.7
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 3.9e-07 58.9 120 25.8
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.1e-07 58.5 134 29.1
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.7e-07 58.2 153 29.4
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.8e-07 57.8 110 29.1
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.1e-06 57.4 78 34.6
A07p33170 Brassica napus HOM05D001614 ORTHO05D000988 1.1e-06 57.4 83 31.3
BolC6t39037H Brassica oleracea HOM05D001614 ORTHO05D000988 1.1e-06 57.4 83 32.5
BraA06t27509Z Brassica rapa HOM05D001614 ORTHO05D000988 1.1e-06 57.4 83 31.3
BraA07t30945Z Brassica rapa HOM05D001614 ORTHO05D000988 1.1e-06 57.4 83 31.3
BraA07t30951Z Brassica rapa HOM05D001614 ORTHO05D000988 1.1e-06 57.4 83 32.5
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 1.5e-06 57.0 75 34.7
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.0e-06 56.6 150 28.0
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.3e-06 55.8 136 27.9
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.3e-06 55.8 134 28.4
C06p39440 Brassica napus HOM05D001614 ORTHO05D000988 3.3e-06 55.8 83 31.3
C06p39450 Brassica napus HOM05D001614 ORTHO05D000988 3.3e-06 55.8 88 29.5
C06p39460 Brassica napus HOM05D001614 ORTHO05D000988 3.3e-06 55.8 88 29.5
C06p39490 Brassica napus HOM05D001614 ORTHO05D000988 3.3e-06 55.8 88 29.5
Thecc.07G086800 Theobroma cacao HOM05D002073 ORTHO05D001803 3.3e-06 55.8 86 34.9
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 4.3e-06 55.5 72 36.1
BcaC08g46074 Brassica carinata HOM05D001614 ORTHO05D000988 5.7e-06 55.1 85 32.9
A07p33160 Brassica napus HOM05D001614 ORTHO05D000988 5.7e-06 55.1 83 32.5
BolC7t43427H Brassica oleracea HOM05D001614 ORTHO05D000988 5.7e-06 55.1 83 31.3
Thecc.07G086900 Theobroma cacao HOM05D002073 ORTHO05D001803 5.7e-06 55.1 86 34.9
Thecc.09G152700 Theobroma cacao HOM05D002073 ORTHO05D001803 5.7e-06 55.1 86 34.9
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 7.4e-06 54.7 138 30.4
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 7.4e-06 54.7 80 31.2
A07p33200 Brassica napus HOM05D001614 ORTHO05D000988 7.4e-06 54.7 83 31.3
C06p39470 Brassica napus HOM05D001614 ORTHO05D000988 7.4e-06 54.7 83 31.3
C06p39500 Brassica napus HOM05D001614 ORTHO05D000988 7.4e-06 54.7 83 31.3
C06p39510 Brassica napus HOM05D001614 ORTHO05D000988 7.4e-06 54.7 83 31.3
BolC6t39044H Brassica oleracea HOM05D001614 ORTHO05D000988 7.4e-06 54.7 83 31.3
BolC6t39045H Brassica oleracea HOM05D001614 ORTHO05D000988 7.4e-06 54.7 83 31.3
BraA06t27507Z Brassica rapa HOM05D001614 ORTHO05D000988 7.4e-06 54.7 86 30.2
BraA07t30944Z Brassica rapa HOM05D001614 ORTHO05D000988 7.4e-06 54.7 83 32.5
BraA07t30950Z Brassica rapa HOM05D001614 ORTHO05D000988 7.4e-06 54.7 83 31.3
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 7.4e-06 54.7 146 28.8
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 7.4e-06 54.7 152 27.0
Thecc.07G085100 Theobroma cacao HOM05D002073 ORTHO05D001803 7.4e-06 54.7 90 34.4
Thecc.07G085400 Theobroma cacao HOM05D002073 ORTHO05D001803 7.4e-06 54.7 90 34.4
Thecc.07G085700 Theobroma cacao HOM05D002073 ORTHO05D001803 7.4e-06 54.7 90 34.4
Thecc.07G086000 Theobroma cacao HOM05D002073 ORTHO05D001803 7.4e-06 54.7 90 34.4
Thecc.07G086400 Theobroma cacao HOM05D002073 ORTHO05D001803 7.4e-06 54.7 90 34.4
Thecc.07G087000 Theobroma cacao HOM05D002073 ORTHO05D001803 7.4e-06 54.7 90 34.4
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 9.7e-06 54.3 134 28.4
A07p33180 Brassica napus HOM05D001614 ORTHO05D000988 9.7e-06 54.3 83 30.1
A07p33190 Brassica napus HOM05D001614 ORTHO05D000988 9.7e-06 54.3 83 30.1
C06p39480 Brassica napus HOM05D001614 ORTHO05D000988 9.7e-06 54.3 83 31.3
C06p39520 Brassica napus HOM05D001614 ORTHO05D000988 9.7e-06 54.3 83 31.3
BolC6t39038H Brassica oleracea HOM05D001614 ORTHO05D000988 9.7e-06 54.3 83 31.3
BolC6t39039H Brassica oleracea HOM05D001614 ORTHO05D000988 9.7e-06 54.3 83 31.3
BolC6t39041H Brassica oleracea HOM05D001614 ORTHO05D000988 9.7e-06 54.3 83 31.3
BraA06t27512Z Brassica rapa HOM05D001614 ORTHO05D000988 9.7e-06 54.3 83 30.1
BraA07t30946Z Brassica rapa HOM05D001614 ORTHO05D000988 9.7e-06 54.3 83 30.1
BraA07t30948Z Brassica rapa HOM05D001614 ORTHO05D000988 9.7e-06 54.3 83 30.1
BraA07t30949Z Brassica rapa HOM05D001614 ORTHO05D000988 9.7e-06 54.3 83 30.1
BraA07t30953Z Brassica rapa HOM05D001614 ORTHO05D000988 9.7e-06 54.3 83 31.3
Medtr1g054825 Medicago truncatula HOM05D008402 ORTHO05D000988 9.7e-06 54.3 113 30.1
Thecc.07G085200 Theobroma cacao HOM05D002073 ORTHO05D001803 9.7e-06 54.3 86 34.9
Thecc.07G085500 Theobroma cacao HOM05D002073 ORTHO05D001803 9.7e-06 54.3 86 34.9
Thecc.07G086100 Theobroma cacao HOM05D002073 ORTHO05D001803 9.7e-06 54.3 86 34.9


User provided reference genes

Program Settings