Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0073331 Rosa chinensis HOM05D012941 ORTHO05D001803 1.0e-84 316.6 155 100.0
RcHm_v2.0_Chr5g0073291 Rosa chinensis HOM05D012941 ORTHO05D001803 2.6e-83 312.0 155 98.1
RcHm_v2.0_Chr5g0073311 Rosa chinensis HOM05D012941 ORTHO05D001803 2.6e-83 312.0 155 98.1
RcHm_v2.0_Chr5g0073271 Rosa chinensis HOM05D012941 ORTHO05D001803 4.4e-83 311.2 155 98.1
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 7.6e-19 97.8 148 41.2
MD16G1259400 Malus domestica HOM05D012941 ORTHO05D009651 4.8e-13 78.6 82 47.6
FvH4_3g40551 Fragaria vesca HOM05D012941 ORTHO05D009651 4.5e-11 72.0 47 74.5
RcHm_v2.0_Chr5g0073261 Rosa chinensis HOM05D012941 ORTHO05D009651 5.9e-11 71.6 154 35.1
Migut.F01215 Erythranthe guttata HOM05D002073 ORTHO05D001803 1.7e-10 70.1 118 33.9
RcHm_v2.0_Chr5g0073281 Rosa chinensis HOM05D012941 ORTHO05D009651 2.9e-10 69.3 154 34.4
RcHm_v2.0_Chr5g0073301 Rosa chinensis HOM05D012941 ORTHO05D009651 2.9e-10 69.3 154 34.4
RcHm_v2.0_Chr5g0073321 Rosa chinensis HOM05D012941 ORTHO05D009651 2.9e-10 69.3 154 34.4
RcHm_v2.0_Chr5g0073341 Rosa chinensis HOM05D012941 ORTHO05D009651 2.9e-10 69.3 154 34.4
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 2.5e-09 66.2 139 32.4
Gohir.A04G049600 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.1e-08 63.2 79 38.0
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 3.6e-08 62.4 75 41.3
Thecc.09G152700 Theobroma cacao HOM05D002073 ORTHO05D001803 3.6e-08 62.4 78 37.2
QL05p012573 Quercus lobata HOM05D008402 ORTHO05D000988 4.6e-08 62.0 88 38.6
FAN11G2253 Fragaria x ananassa HOM05D012941 ORTHO05D009651 6.1e-08 61.6 110 37.3
Gorai.009G357000 Gossypium raimondii HOM05D002073 ORTHO05D001803 6.1e-08 61.6 79 36.7
Gohir.D05G332080 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.0e-07 60.8 79 35.4
Thecc.07G087000 Theobroma cacao HOM05D002073 ORTHO05D001803 1.0e-07 60.8 90 36.7
Gohir.A04G049775 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.4e-07 60.5 79 35.4
Gohir.D05G332213 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.4e-07 60.5 79 36.7
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 1.4e-07 60.5 143 30.8
Gohir.D05G328700 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.8e-07 60.1 79 35.4
PGSC0003DMG400011221 Solanum tuberosum HOM05D022492 ORTHO05D025233 1.8e-07 60.1 79 34.2
Gohir.D05G332032 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.3e-07 59.7 89 34.8
Gohir.D05G332273 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.3e-07 59.7 79 35.4
Thecc.07G085100 Theobroma cacao HOM05D002073 ORTHO05D001803 2.3e-07 59.7 76 38.2
Thecc.07G085400 Theobroma cacao HOM05D002073 ORTHO05D001803 2.3e-07 59.7 76 38.2
Thecc.07G085700 Theobroma cacao HOM05D002073 ORTHO05D001803 2.3e-07 59.7 76 38.2
Thecc.07G086000 Theobroma cacao HOM05D002073 ORTHO05D001803 2.3e-07 59.7 76 38.2
Thecc.07G086400 Theobroma cacao HOM05D002073 ORTHO05D001803 2.3e-07 59.7 76 38.2
Gohir.A04G043538 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.0e-07 59.3 79 35.4
Gohir.D05G327175 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.0e-07 59.3 79 36.7
Gorai.009G356600 Gossypium raimondii HOM05D002073 ORTHO05D001803 3.0e-07 59.3 79 35.4
Thecc.07G081400 Theobroma cacao HOM05D002073 ORTHO05D001803 3.0e-07 59.3 77 39.0
Thecc.07G081500 Theobroma cacao HOM05D002073 ORTHO05D001803 3.0e-07 59.3 77 39.0
Thecc.07G081600 Theobroma cacao HOM05D002073 ORTHO05D001803 3.0e-07 59.3 77 39.0
Thecc.07G081700 Theobroma cacao HOM05D002073 ORTHO05D001803 3.0e-07 59.3 77 39.0
Thecc.07G081900 Theobroma cacao HOM05D002073 ORTHO05D001803 3.0e-07 59.3 77 39.0
Gohir.A04G043502 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.9e-07 58.9 79 34.2
Gohir.A04G043542 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.9e-07 58.9 79 35.4
Thecc.03G085200 Theobroma cacao HOM05D002073 ORTHO05D001803 3.9e-07 58.9 79 40.5
Thecc.09G158400 Theobroma cacao HOM05D002073 ORTHO05D001803 3.9e-07 58.9 90 31.1
Gohir.A04G043506 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.A04G043510 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.A04G043512 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.A04G043518 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.A04G043520 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.A04G043530 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.A04G043532 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.A04G043544 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.A04G043804 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.A04G043840 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 77 36.4
Gohir.D05G327000 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 81 34.6
Gohir.D05G327100 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 36.7
Gohir.D05G331984 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332008 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332200 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332204 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332208 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332212 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332216 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332220 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332232 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332248 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332252 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332256 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 34.2
Gohir.D05G332400 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332404 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gohir.D05G332408 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gorai.009G356500 Gossypium raimondii HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gorai.009G357200 Gossypium raimondii HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 35.4
Gorai.009G357500 Gossypium raimondii HOM05D002073 ORTHO05D001803 5.1e-07 58.5 81 34.6
Thecc.07G082100 Theobroma cacao HOM05D002073 ORTHO05D001803 5.1e-07 58.5 77 39.0
Thecc.07G085300 Theobroma cacao HOM05D002073 ORTHO05D001803 5.1e-07 58.5 90 35.6
Thecc.07G085600 Theobroma cacao HOM05D002073 ORTHO05D001803 5.1e-07 58.5 90 35.6
Thecc.07G086200 Theobroma cacao HOM05D002073 ORTHO05D001803 5.1e-07 58.5 90 35.6
Thecc.07G086500 Theobroma cacao HOM05D002073 ORTHO05D001803 5.1e-07 58.5 90 35.6
Gohir.A04G043514 Gossypium hirsutum HOM05D002073 ORTHO05D001803 6.7e-07 58.2 79 35.4
Gohir.A04G043526 Gossypium hirsutum HOM05D002073 ORTHO05D001803 6.7e-07 58.2 79 35.4
Gohir.A04G043534 Gossypium hirsutum HOM05D002073 ORTHO05D001803 6.7e-07 58.2 79 35.4
Gohir.A04G043562 Gossypium hirsutum HOM05D002073 ORTHO05D001803 6.7e-07 58.2 79 36.7
Gohir.A04G043700 Gossypium hirsutum HOM05D002073 ORTHO05D001803 6.7e-07 58.2 79 35.4
Gohir.A04G043844 Gossypium hirsutum HOM05D002073 ORTHO05D001803 6.7e-07 58.2 77 36.4
Gohir.A04G049656 Gossypium hirsutum HOM05D002073 ORTHO05D001803 6.7e-07 58.2 79 35.4
Prupe.2G072700 Prunus persica HOM05D002073 ORTHO05D001803 6.7e-07 58.2 72 33.3
Thecc.07G086700 Theobroma cacao HOM05D002073 ORTHO05D001803 6.7e-07 58.2 76 36.8
Thecc.09G152800 Theobroma cacao HOM05D002073 ORTHO05D001803 6.7e-07 58.2 76 32.9
Migut.K01315 Erythranthe guttata HOM05D008521 ORTHO05D012225 8.8e-07 57.8 97 27.8
Gohir.A04G043808 Gossypium hirsutum HOM05D002073 ORTHO05D001803 8.8e-07 57.8 77 36.4
Gohir.A04G043812 Gossypium hirsutum HOM05D002073 ORTHO05D001803 8.8e-07 57.8 77 36.4
Gohir.A04G043816 Gossypium hirsutum HOM05D002073 ORTHO05D001803 8.8e-07 57.8 77 36.4
Gohir.A04G043820 Gossypium hirsutum HOM05D002073 ORTHO05D001803 8.8e-07 57.8 77 36.4
Gohir.A04G043824 Gossypium hirsutum HOM05D002073 ORTHO05D001803 8.8e-07 57.8 77 36.4
Gohir.A04G043828 Gossypium hirsutum HOM05D002073 ORTHO05D001803 8.8e-07 57.8 77 36.4
Gohir.D05G326900 Gossypium hirsutum HOM05D002073 ORTHO05D001803 8.8e-07 57.8 79 34.2
Gohir.D05G328755 Gossypium hirsutum HOM05D002073 ORTHO05D001803 8.8e-07 57.8 79 35.4
Gohir.D05G332261 Gossypium hirsutum HOM05D002073 ORTHO05D001803 8.8e-07 57.8 80 35.0
Gorai.009G356800 Gossypium raimondii HOM05D002073 ORTHO05D001803 8.8e-07 57.8 79 36.7
Gorai.009G356900 Gossypium raimondii HOM05D002073 ORTHO05D001803 8.8e-07 57.8 79 36.7
Gorai.009G357100 Gossypium raimondii HOM05D002073 ORTHO05D001803 8.8e-07 57.8 79 35.4
Thecc.07G084000 Theobroma cacao HOM05D002073 ORTHO05D001803 8.8e-07 57.8 78 38.5
Gohir.A04G043528 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.1e-06 57.4 79 35.4
Gohir.A04G043733 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.1e-06 57.4 79 35.4
Gohir.A04G043836 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.1e-06 57.4 77 36.4
Gohir.D05G328710 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.1e-06 57.4 79 34.2
Gohir.D05G332236 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.1e-06 57.4 79 35.4
Thecc.07G085800 Theobroma cacao HOM05D002073 ORTHO05D001803 1.1e-06 57.4 90 35.6
Gohir.D05G328720 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.5e-06 57.0 79 34.2
Gohir.D05G328730 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.5e-06 57.0 79 35.4
Gohir.D05G332240 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.5e-06 57.0 79 34.2
Gorai.009G356700 Gossypium raimondii HOM05D002073 ORTHO05D001803 1.5e-06 57.0 79 34.2
Gohir.A04G043582 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.0e-06 56.6 79 34.2
Gohir.D05G327066 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.0e-06 56.6 79 35.4
Gohir.A04G043868 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.5e-06 56.2 79 35.4
Gohir.D05G331924 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.5e-06 56.2 77 35.1
Gorai.009G352300 Gossypium raimondii HOM05D002073 ORTHO05D001803 2.5e-06 56.2 79 34.2
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.3e-06 55.8 77 33.8
Gohir.1Z049335 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.A04G043578 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 34.2
Gohir.A04G049670 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 34.2
Gohir.D05G328750 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 34.2
Gohir.D05G328760 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 34.2
Gohir.D05G328945 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G328950 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G328955 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G328960 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G328965 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G328970 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G328975 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G328980 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G329000 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G329033 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G329066 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G329099 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G329132 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G331972 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 34.2
Gohir.D05G332104 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 34.2
Gohir.D05G332140 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 34.2
Gohir.D05G332152 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 88 35.2
Gohir.D05G332228 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 31.6
Gorai.N010600 Gossypium raimondii HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 34.2
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 3.3e-06 55.8 126 29.4
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.3e-06 55.5 122 31.1
COL.COLO4_04380 Corchorus olitorius HOM05D002073 ORTHO05D001803 4.3e-06 55.5 78 34.6
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 4.3e-06 55.5 118 32.2
Gohir.A01G064100 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 75 33.3
Gohir.A04G043554 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.A04G043800 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 34.2
Gohir.A04G043832 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 77 35.1
Gohir.D05G328233 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G328735 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G328770 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G328850 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 34.2
Gohir.D05G328920 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 31.6
Gohir.D05G332068 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G332116 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 78 34.6
Gohir.A04G043540 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 34.2
Gohir.A04G043552 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 32.9
Gohir.A04G043566 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 89 32.6
Gohir.D05G326675 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 77 33.8
Gohir.D05G328800 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 34.2
Gohir.A04G043600 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 79 32.9
Gohir.A04G043864 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 79 34.2
Gohir.A04G043876 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 79 34.2
Gohir.A05G328332 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 77 33.8
Gohir.D05G331948 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 79 35.4
COL.COLO4_08463 Corchorus olitorius HOM05D002073 ORTHO05D001803 9.7e-06 54.3 78 33.3
Gohir.A04G049642 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 34.2
Gohir.D05G329264 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 32.9
QL02p094713 Quercus lobata HOM05D043071 ORTHO05D025275 9.7e-06 54.3 79 34.2


User provided reference genes

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