Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0073291 Rosa chinensis HOM05D012941 ORTHO05D001803 6.1e-85 317.4 155 100.0
RcHm_v2.0_Chr5g0073311 Rosa chinensis HOM05D012941 ORTHO05D001803 6.1e-85 317.4 155 100.0
RcHm_v2.0_Chr5g0073331 Rosa chinensis HOM05D012941 ORTHO05D001803 2.0e-83 312.4 155 98.1
RcHm_v2.0_Chr5g0073271 Rosa chinensis HOM05D012941 ORTHO05D001803 8.3e-82 307.0 155 96.1
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 1.0e-18 97.4 148 41.9
MD16G1259400 Malus domestica HOM05D012941 ORTHO05D009651 2.4e-12 76.3 82 46.3
FvH4_3g40551 Fragaria vesca HOM05D012941 ORTHO05D009651 2.0e-11 73.2 47 76.6
RcHm_v2.0_Chr5g0073261 Rosa chinensis HOM05D012941 ORTHO05D009651 5.9e-11 71.6 154 35.7
RcHm_v2.0_Chr5g0073281 Rosa chinensis HOM05D012941 ORTHO05D009651 2.9e-10 69.3 154 35.1
RcHm_v2.0_Chr5g0073301 Rosa chinensis HOM05D012941 ORTHO05D009651 2.9e-10 69.3 154 35.1
RcHm_v2.0_Chr5g0073321 Rosa chinensis HOM05D012941 ORTHO05D009651 2.9e-10 69.3 154 35.1
RcHm_v2.0_Chr5g0073341 Rosa chinensis HOM05D012941 ORTHO05D009651 2.9e-10 69.3 154 35.1
Migut.F01215 Erythranthe guttata HOM05D002073 ORTHO05D001803 5.0e-10 68.6 118 33.9
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 9.4e-09 64.3 139 31.7
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 7.9e-08 61.2 75 41.3
FAN11G2253 Fragaria x ananassa HOM05D012941 ORTHO05D009651 7.9e-08 61.2 110 37.3
Thecc.09G152700 Theobroma cacao HOM05D002073 ORTHO05D001803 1.4e-07 60.5 78 37.2
Gohir.A04G049600 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.3e-07 59.7 79 35.4
QL05p012573 Quercus lobata HOM05D008402 ORTHO05D000988 2.3e-07 59.7 88 37.5
Gorai.009G357000 Gossypium raimondii HOM05D002073 ORTHO05D001803 3.9e-07 58.9 79 34.2
PGSC0003DMG400011221 Solanum tuberosum HOM05D022492 ORTHO05D025233 3.9e-07 58.9 79 32.9
Thecc.07G087000 Theobroma cacao HOM05D002073 ORTHO05D001803 3.9e-07 58.9 90 36.7
Gohir.A04G043502 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.1e-07 58.5 79 34.2
Gohir.A04G049775 Gossypium hirsutum HOM05D002073 ORTHO05D001803 6.7e-07 58.2 79 34.2
Gohir.D05G332080 Gossypium hirsutum HOM05D002073 ORTHO05D001803 6.7e-07 58.2 79 32.9
Gohir.D05G332213 Gossypium hirsutum HOM05D002073 ORTHO05D001803 8.8e-07 57.8 79 34.2
Thecc.07G085100 Theobroma cacao HOM05D002073 ORTHO05D001803 8.8e-07 57.8 76 38.2
Thecc.07G085400 Theobroma cacao HOM05D002073 ORTHO05D001803 8.8e-07 57.8 76 38.2
Thecc.07G085700 Theobroma cacao HOM05D002073 ORTHO05D001803 8.8e-07 57.8 76 38.2
Thecc.07G086000 Theobroma cacao HOM05D002073 ORTHO05D001803 8.8e-07 57.8 76 38.2
Thecc.07G086400 Theobroma cacao HOM05D002073 ORTHO05D001803 8.8e-07 57.8 76 38.2
Gohir.D05G328700 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.1e-06 57.4 79 32.9
Gohir.D05G332273 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.1e-06 57.4 79 32.9
Thecc.07G081400 Theobroma cacao HOM05D002073 ORTHO05D001803 1.1e-06 57.4 77 39.0
Thecc.07G081500 Theobroma cacao HOM05D002073 ORTHO05D001803 1.1e-06 57.4 77 39.0
Thecc.07G081600 Theobroma cacao HOM05D002073 ORTHO05D001803 1.1e-06 57.4 77 39.0
Thecc.07G081700 Theobroma cacao HOM05D002073 ORTHO05D001803 1.1e-06 57.4 77 39.0
Thecc.07G081900 Theobroma cacao HOM05D002073 ORTHO05D001803 1.1e-06 57.4 77 39.0
Thecc.09G152800 Theobroma cacao HOM05D002073 ORTHO05D001803 1.1e-06 57.4 76 34.2
Gohir.D05G327100 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.0e-06 56.6 79 34.2
Gohir.D05G328720 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.0e-06 56.6 79 34.2
Gohir.D05G332032 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.0e-06 56.6 89 32.6
Gohir.D05G332252 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.0e-06 56.6 79 34.2
Gorai.009G356700 Gossypium raimondii HOM05D002073 ORTHO05D001803 2.0e-06 56.6 79 34.2
Thecc.07G082100 Theobroma cacao HOM05D002073 ORTHO05D001803 2.0e-06 56.6 77 39.0
Thecc.07G085300 Theobroma cacao HOM05D002073 ORTHO05D001803 2.0e-06 56.6 90 35.6
Thecc.07G085600 Theobroma cacao HOM05D002073 ORTHO05D001803 2.0e-06 56.6 90 35.6
Thecc.07G086200 Theobroma cacao HOM05D002073 ORTHO05D001803 2.0e-06 56.6 90 35.6
Thecc.07G086500 Theobroma cacao HOM05D002073 ORTHO05D001803 2.0e-06 56.6 90 35.6
Thecc.09G158400 Theobroma cacao HOM05D002073 ORTHO05D001803 2.0e-06 56.6 90 30.0
Thecc.07G086700 Theobroma cacao HOM05D002073 ORTHO05D001803 2.5e-06 56.2 76 36.8
Gohir.A04G043538 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gohir.D05G326900 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 31.6
Gohir.D05G327175 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 34.2
Gohir.D05G332248 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gorai.009G356500 Gossypium raimondii HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gorai.009G356600 Gossypium raimondii HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Gorai.009G357200 Gossypium raimondii HOM05D002073 ORTHO05D001803 3.3e-06 55.8 79 32.9
Thecc.07G084000 Theobroma cacao HOM05D002073 ORTHO05D001803 3.3e-06 55.8 78 38.5
Migut.K01315 Erythranthe guttata HOM05D008521 ORTHO05D012225 4.3e-06 55.5 97 26.8
Gohir.A04G043542 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G327000 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 81 32.1
Gohir.D05G331984 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G332008 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G332200 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G332204 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G332208 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G332212 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G332216 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G332220 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G332232 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G332256 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 31.6
Gohir.D05G332400 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G332404 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Gohir.D05G332408 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.3e-06 55.5 79 32.9
Thecc.07G085800 Theobroma cacao HOM05D002073 ORTHO05D001803 4.3e-06 55.5 90 35.6
Gohir.A01G064100 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 75 33.3
Gohir.A04G043506 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 32.9
Gohir.A04G043510 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 32.9
Gohir.A04G043512 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 32.9
Gohir.A04G043518 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 32.9
Gohir.A04G043520 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 32.9
Gohir.A04G043530 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 32.9
Gohir.A04G043532 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 32.9
Gohir.A04G043544 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 32.9
Gohir.A04G043804 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 32.9
Gohir.A04G043840 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 77 33.8
Gohir.D05G328755 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 32.9
Gorai.009G356800 Gossypium raimondii HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 34.2
Gorai.009G356900 Gossypium raimondii HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 34.2
Gorai.009G357100 Gossypium raimondii HOM05D002073 ORTHO05D001803 5.7e-06 55.1 79 32.9
Gorai.009G357500 Gossypium raimondii HOM05D002073 ORTHO05D001803 5.7e-06 55.1 81 32.1
Gohir.A04G043514 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 79 32.9
Gohir.A04G043526 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 79 32.9
Gohir.A04G043534 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 79 32.9
Gohir.A04G043562 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 79 34.2
Gohir.A04G043700 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 79 32.9
Gohir.A04G043844 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 77 33.8
Gohir.A04G049656 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 79 32.9
Gohir.D05G327066 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 79 32.9
Gohir.D05G329231 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.4e-06 54.7 79 32.9
Prupe.2G072700 Prunus persica HOM05D002073 ORTHO05D001803 7.4e-06 54.7 72 30.6
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 9.7e-06 54.3 118 32.2
Gohir.1Z049335 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.A04G043808 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 77 33.8
Gohir.A04G043812 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 77 33.8
Gohir.A04G043816 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 77 33.8
Gohir.A04G043820 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 77 33.8
Gohir.A04G043824 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 77 33.8
Gohir.A04G043828 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 77 33.8
Gohir.A04G043876 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 32.9
Gohir.D05G328730 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 32.9
Gohir.D05G328945 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G328950 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G328955 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G328960 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G328965 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G328970 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G328975 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G328980 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G329000 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G329033 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G329066 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G329099 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G329132 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G332068 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 31.6
Gohir.D05G332236 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.7e-06 54.3 79 32.9


User provided reference genes

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