Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0072821 Rosa chinensis HOM05D003167 ORTHO05D003929 3.0e-27 124.4 61 100.0
FvH4_6g17312 Fragaria vesca HOM05D003167 ORTHO05D003929 7.7e-15 83.2 44 93.2
FAN02G2003 Fragaria x ananassa HOM05D003167 ORTHO05D003929 7.7e-15 83.2 44 93.2
FAN05G3544 Fragaria x ananassa HOM05D003167 ORTHO05D003929 7.7e-15 83.2 44 93.2
FAN05G3981 Fragaria x ananassa HOM05D003167 ORTHO05D003929 7.7e-15 83.2 44 93.2
FAN14G2907 Fragaria x ananassa HOM05D003167 ORTHO05D003929 7.7e-15 83.2 44 93.2
Hma1.2p1_0564F.1_g179130 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 7.7e-15 83.2 44 93.2
RcHm_v2.0_Chr3g0471451 Rosa chinensis HOM05D003167 ORTHO05D003929 7.7e-15 83.2 44 93.2
Atru.chr8.1695 Acer truncatum HOM05D003167 ORTHO05D003929 2.2e-14 81.6 44 90.9
HanXRQChr11g0325191 Helianthus annuus HOM05D003167 ORTHO05D003929 2.2e-14 81.6 44 90.9
Lj3C1008T14 Lonicera japonica HOM05D003167 ORTHO05D003929 2.2e-14 81.6 44 90.9
MD14G1096200 Malus domestica HOM05D003167 ORTHO05D003929 2.2e-14 81.6 44 90.9
Os03g0800100 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 2.2e-14 81.6 59 71.2
Peaxi162Scf00732g00028 Petunia axillaris HOM05D003167 ORTHO05D003929 2.9e-14 81.3 44 88.6
BcaC07g42222 Brassica carinata HOM05D003167 ORTHO05D003929 3.8e-14 80.9 44 88.6
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 3.8e-14 80.9 44 88.6
C08p52570 Brassica napus HOM05D003167 ORTHO05D003929 3.8e-14 80.9 44 88.6
BolC8t52784H Brassica oleracea HOM05D003167 ORTHO05D003929 3.8e-14 80.9 44 88.6
BraA09t42148Z Brassica rapa HOM05D003167 ORTHO05D003929 3.8e-14 80.9 44 88.6
CARHR003240 Cardamine hirsuta HOM05D003167 ORTHO05D003929 3.8e-14 80.9 44 88.6
DCAR_020795 Daucus carota HOM05D003167 ORTHO05D003929 3.8e-14 80.9 44 90.9
Thhalv10006994m.g Eutrema salsugineum HOM05D003167 ORTHO05D003929 3.8e-14 80.9 44 88.6
QL07p041296 Quercus lobata HOM05D003167 ORTHO05D003929 3.8e-14 80.9 44 88.6
Sp1g02770 Schrenkiella parvula HOM05D003167 ORTHO05D003929 3.8e-14 80.9 44 88.6
GSVIVG01033725001 Vitis vinifera HOM05D003167 ORTHO05D003929 3.8e-14 80.9 49 81.6
CANSAT80G1311 Cannabis sativa HOM05D003167 ORTHO05D003929 5.0e-14 80.5 44 88.6
CiPaw.10G002600 Carya illinoinensis HOM05D003167 ORTHO05D003929 5.0e-14 80.5 59 72.9
Potri.006G118700 Populus trichocarpa HOM05D003167 ORTHO05D003929 5.0e-14 80.5 44 86.4
Prupe.7G122300 Prunus persica HOM05D003167 ORTHO05D003929 5.0e-14 80.5 44 88.6
Sabra06G0093300 Salix brachista HOM05D003167 ORTHO05D003929 5.0e-14 80.5 44 86.4
SalBow8G1467 Salvia bowleyana HOM05D003167 ORTHO05D003929 5.0e-14 80.5 44 88.6
SalBow8G3947 Salvia bowleyana HOM05D003167 ORTHO05D003929 5.0e-14 80.5 44 88.6
TAR623G0013 Trochodendron aralioides HOM05D003167 ORTHO05D003929 5.0e-14 80.5 59 72.9
Aqoxy1G01021 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 6.5e-14 80.1 59 71.2
Cfa016494 Carpinus fangiana HOM05D003167 ORTHO05D003929 6.5e-14 80.1 59 71.2
Haze_19497 Corylus avellana HOM05D003167 ORTHO05D003929 6.5e-14 80.1 59 71.2
Aqoxy1G01022 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 8.5e-14 79.7 44 88.6
MSTRG.21603 Avicennia marina HOM05D003167 ORTHO05D003929 8.5e-14 79.7 44 88.6
A09p68130 Brassica napus HOM05D003167 ORTHO05D003929 8.5e-14 79.7 44 86.4
CSS0014862 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 8.5e-14 79.7 44 88.6
CSS0043785 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 8.5e-14 79.7 44 88.6
Cc00_g14960 Coffea canephora HOM05D003167 ORTHO05D003929 8.5e-14 79.7 44 88.6
Cc00_g14970 Coffea canephora HOM05D003167 ORTHO05D003929 8.5e-14 79.7 44 88.6
COL.COLO4_22264 Corchorus olitorius HOM05D003167 ORTHO05D003929 8.5e-14 79.7 44 88.6
Oeu005667.1 Olea europaea HOM05D003167 ORTHO05D003929 8.5e-14 79.7 44 88.6
Aa31LG1G9100 Aethionema arabicum HOM05D003167 ORTHO05D003929 1.1e-13 79.3 44 86.4
Rhsim03G0085500 Rhododendron simsii HOM05D003167 ORTHO05D003929 1.1e-13 79.3 44 88.6
vmacro07353 Vaccinium macrocarpon HOM05D003167 ORTHO05D003929 1.1e-13 79.3 44 88.6
Actinidia26630 Actinidia chinensis HOM05D003167 ORTHO05D003929 1.4e-13 79.0 59 72.9
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 1.4e-13 79.0 44 88.6
BolC5t29003H Brassica oleracea HOM05D003167 ORTHO05D003929 1.4e-13 79.0 44 88.6
Ciclev10011207m.g Citrus clementina HOM05D003167 ORTHO05D003929 1.4e-13 79.0 43 88.4
Dinv35839 Davidia involucrata HOM05D003167 ORTHO05D003929 1.4e-13 79.0 44 86.4
Lsat_1_v5_gn_2_23140 Lactuca sativa HOM05D003167 ORTHO05D003929 1.4e-13 79.0 44 88.6
Zm00001eb061170 Zea mays HOM05D003167 ORTHO05D003929 1.4e-13 79.0 44 86.4
arahy.Tifrunner.gnm1.ann1.P92TZX Arachis hypogaea HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
arahy.Tifrunner.gnm1.ann1.WY8M22 Arachis hypogaea HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
Ca_08942_v3 Cicer arietinum L. HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
ClCG10G019590 Citrullus lanatus HOM05D003167 ORTHO05D003929 1.9e-13 78.6 59 71.2
Glyma.03G188600 Glycine max HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
Glyma.19G188800 Glycine max HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
Lalb_Chr25g0288761 Lupinus albus HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
Medtr7g102700 Medicago truncatula HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
Phvul.001G184000 Phaseolus vulgaris HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
Psat3g037760 Pisum sativum HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
SGA_v2.0_scaffold312G48279 Striga asiatica HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
THA.LOC104816364 Tarenaya hassleriana HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
VMungo1383G0302 Vigna mungo HOM05D003167 ORTHO05D003929 1.9e-13 78.6 44 86.4
CDE04G1328 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 2.5e-13 78.2 44 86.4
CsaV3_3G036590 Cucumis sativus L. HOM05D003167 ORTHO05D003929 2.5e-13 78.2 59 69.5
Duzib093G1992 Durio zibethinus HOM05D003167 ORTHO05D003929 2.5e-13 78.2 44 84.1
Psat6g078080 Pisum sativum HOM05D003167 ORTHO05D003929 2.5e-13 78.2 44 86.4
Sed0027110 Sechium edule HOM05D003167 ORTHO05D003929 2.5e-13 78.2 59 69.5
TPR.G27088 Trifolium pratense HOM05D003167 ORTHO05D003929 2.5e-13 78.2 44 86.4
ATR0724G050 Amborella trichopoda HOM05D003167 ORTHO05D003929 3.2e-13 77.8 44 84.1
BcaC05g24486 Brassica carinata HOM05D003167 ORTHO05D003929 3.2e-13 77.8 44 84.1
Cc10_g12700 Coffea canephora HOM05D003167 ORTHO05D003929 3.2e-13 77.8 43 88.4
ECA238G2918 Erigeron canadensis HOM05D003167 ORTHO05D003929 3.2e-13 77.8 44 86.4
Gohir.A04G067800 Gossypium hirsutum HOM05D003167 ORTHO05D003929 3.2e-13 77.8 44 86.4
Gohir.D04G106400 Gossypium hirsutum HOM05D003167 ORTHO05D003929 3.2e-13 77.8 44 86.4
Gorai.009G410400 Gossypium raimondii HOM05D003167 ORTHO05D003929 3.2e-13 77.8 44 86.4
Manes.08G017200 Manihot esculenta HOM05D003167 ORTHO05D003929 3.2e-13 77.8 44 84.1
SMO169G0108 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 3.2e-13 77.8 44 84.1
SEGI_24622 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 3.2e-13 77.8 44 84.1
Thecc.05G076300 Theobroma cacao HOM05D003167 ORTHO05D003929 4.2e-13 77.4 42 90.5
PSO339G0841 Papaver somniferum HOM05D003167 ORTHO05D003929 5.5e-13 77.0 44 84.1
unitig_578.g16659 Utricularia gibba HOM05D003167 ORTHO05D003929 5.5e-13 77.0 44 84.1
Cpa.g.sc5.120 Carica papaya HOM05D003167 ORTHO05D003929 7.2e-13 76.6 44 84.1
Migut.G00710 Erythranthe guttata HOM05D003167 ORTHO05D003929 7.2e-13 76.6 44 84.1
AagrBONN_evm.TU.Sc2ySwM_344.2239 Anthoceros agrestis HOM05D003167 ORTHO05D003929 9.4e-13 76.3 44 81.8
Lalb_Chr21g0315291 Lupinus albus HOM05D003167 ORTHO05D003929 9.4e-13 76.3 44 81.8
Nitab4.5_0002027g0020 Nicotiana tabacum HOM05D003167 ORTHO05D003929 1.2e-12 75.9 44 79.5
Peaxi162Scf01089g10011 Petunia axillaris HOM05D003167 ORTHO05D003929 1.2e-12 75.9 44 79.5
TPR.G31678 Trifolium pratense HOM05D003167 ORTHO05D003929 1.2e-12 75.9 44 84.1
AL1G13510 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 1.6e-12 75.5 42 85.7
AL4G33010 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 1.6e-12 75.5 44 84.1
AT1G03910 Arabidopsis thaliana HOM05D003167 ORTHO05D003929 1.6e-12 75.5 42 85.7
Carub.0001s0306 Capsella rubella HOM05D003167 ORTHO05D003929 1.6e-12 75.5 42 85.7
Mapoly0001s0156 Marchantia polymorpha HOM05D003167 ORTHO05D003929 1.6e-12 75.5 44 81.8
Medtr1g061860 Medicago truncatula HOM05D003167 ORTHO05D003929 1.6e-12 75.5 44 84.1
VMungo0720G2588 Vigna mungo HOM05D003167 ORTHO05D003929 1.6e-12 75.5 44 81.8
Zm00001eb032700 Zea mays HOM05D003167 ORTHO05D003929 1.6e-12 75.5 50 78.0
Solyc10g085410.3 Solanum lycopersicum HOM05D003167 ORTHO05D003929 2.1e-12 75.1 44 77.3
Sopen10g034860 Solanum pennellii HOM05D003167 ORTHO05D003929 2.1e-12 75.1 44 77.3
PGSC0003DMG400040194 Solanum tuberosum HOM05D003167 ORTHO05D003929 2.1e-12 75.1 44 77.3
CAN.G738.3 Capsicum annuum HOM05D003167 ORTHO05D003929 2.7e-12 74.7 42 81.0
Eucgr.K02416 Eucalyptus grandis HOM05D003167 ORTHO05D003929 2.7e-12 74.7 42 85.7
Pp3c27_420 Physcomitrium patens HOM05D003167 ORTHO05D003929 2.7e-12 74.7 44 79.5
Glyma.13G148300 Glycine max HOM05D003167 ORTHO05D003929 3.6e-12 74.3 44 79.5
PGR142G4079 Punica granatum HOM05D003167 ORTHO05D003929 3.6e-12 74.3 49 77.6
Thecc.08G192100 Theobroma cacao HOM05D003167 ORTHO05D003929 3.6e-12 74.3 42 85.7
MD12G1102200 Malus domestica HOM05D003167 ORTHO05D003929 4.6e-12 73.9 44 84.1
SHI27742 Sapria himalayana HOM05D003167 ORTHO05D003929 7.9e-12 73.2 44 77.3
TAR636G1269 Trochodendron aralioides HOM05D003167 ORTHO05D003929 7.9e-12 73.2 59 66.1
HPP92_017793 Vanilla planifolia HOM05D003167 ORTHO05D003929 1.0e-11 72.8 44 72.7
ECA232G4802 Erigeron canadensis HOM05D003167 ORTHO05D003929 1.4e-11 72.4 44 79.5
CARHR131270 Cardamine hirsuta HOM05D003167 ORTHO05D003929 1.8e-11 72.0 44 79.5
MELO3C009413.2 Cucumis melo HOM05D003167 ORTHO05D003929 1.8e-11 72.0 64 64.1
PSO210G0575 Papaver somniferum HOM05D003167 ORTHO05D003929 6.7e-11 70.1 44 77.3
Atru.chr10.1911 Acer truncatum HOM05D003167 ORTHO05D003929 2.6e-10 68.2 50 66.0
Atru.chr10.2405 Acer truncatum HOM05D003167 ORTHO05D003929 3.3e-10 67.8 49 69.4
FvH4_1g06450 Fragaria vesca HOM05D003167 ORTHO05D003929 3.3e-10 67.8 44 72.7
FAN19G3088 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.3e-10 67.8 44 72.7
FAN26G0867 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.3e-10 67.8 44 72.7
FAN26G2184 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.3e-10 67.8 44 72.7
EL10Ac7g16722 Beta vulgaris HOM05D003167 ORTHO05D003929 4.4e-10 67.4 44 77.3
FAN23G0551 Fragaria x ananassa HOM05D003167 ORTHO05D003929 4.4e-10 67.4 44 72.7
Thecc.06G013600 Theobroma cacao HOM05D003167 ORTHO05D003929 4.4e-10 67.4 44 77.3
Lj8P306T56 Lonicera japonica HOM05D003167 ORTHO05D003929 7.4e-10 66.6 44 72.7
Carub.0004s1866 Capsella rubella HOM05D003167 ORTHO05D003929 1.3e-09 65.9 44 77.3
Ah.15g091330 Amaranthus hybridus HOM05D003167 ORTHO05D003929 2.8e-09 64.7 44 72.7
CBR_g4119 Chara braunii HOM05D003167 ORTHO05D003929 4.8e-09 63.9 37 81.1
AUR62040188 Chenopodium quinoa HOM05D003167 ORTHO05D003929 4.8e-09 63.9 44 72.7
AUR62042696 Chenopodium quinoa HOM05D003167 ORTHO05D003929 4.8e-09 63.9 44 72.7
FAN28G1035 Fragaria x ananassa HOM05D003167 ORTHO05D003929 4.8e-09 63.9 44 68.2
Hma1.2p1_2996F.1_g331470 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 6.9e-08 60.1 44 72.7
SMO364G0524 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 9.1e-08 59.7 39 74.4
Hund04098 Selenicereus undatus HOM05D003167 ORTHO05D003929 1.5e-07 58.9 36 80.6
Hma1.2p1_0033F.1_g020920 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 3.4e-07 57.8 44 65.9
PGR083G2067 Punica granatum HOM05D003167 ORTHO05D003929 3.4e-07 57.8 43 67.4
RcHm_v2.0_Chr2g0092191 Rosa chinensis HOM05D003167 ORTHO05D003929 4.5e-07 57.4 36 72.2
Sc01g0003900 Simmondsia chinensis HOM05D003167 ORTHO05D003929 7.7e-07 56.6 44 63.6


User provided reference genes

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