Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0072341 Rosa chinensis HOM05D006429 ORTHO05D345740 2.6e-39 164.9 80 100.0
RcHm_v2.0_Chr6g0298181 Rosa chinensis HOM05D006429 ORTHO05D008173 3.7e-17 91.3 90 58.9
Prupe.1G479100 Prunus persica HOM05D006429 ORTHO05D008173 3.2e-13 78.2 89 48.3
MD08G1148100 Malus domestica HOM05D006429 ORTHO05D008173 9.4e-13 76.6 90 50.0
FAN15G1390 Fragaria x ananassa HOM05D006429 ORTHO05D008173 1.8e-11 72.4 89 51.7
FAN27G0392 Fragaria x ananassa HOM05D006429 ORTHO05D008173 2.3e-11 72.0 91 50.5
FvH4_2g29360 Fragaria vesca HOM05D006429 ORTHO05D008173 3.0e-11 71.6 89 50.6
CSS0049939 Camellia sinensis var. sinensis HOM05D006429 ORTHO05D008173 2.0e-10 68.9 89 43.8
FAN24G2390 Fragaria x ananassa HOM05D006429 ORTHO05D008173 3.3e-10 68.2 89 49.4
TAR626G0443 Trochodendron aralioides HOM05D006429 ORTHO05D008173 3.3e-10 68.2 90 44.4
Actinidia15677 Actinidia chinensis HOM05D006429 ORTHO05D008173 5.7e-10 67.4 87 44.8
Nn8g39429 Nelumbo nucifera HOM05D006429 ORTHO05D008173 5.7e-10 67.4 91 44.0
TWI32G0327 Tripterygium wilfordii HOM05D006429 ORTHO05D008173 1.3e-09 66.2 89 44.9
CANSAT01G2886 Cannabis sativa HOM05D006429 ORTHO05D008173 1.7e-09 65.9 87 47.1
PGR044G2505 Punica granatum HOM05D006429 ORTHO05D008173 1.7e-09 65.9 89 43.8
Cpa.g.sc115.3 Carica papaya HOM05D006429 ORTHO05D008173 2.2e-09 65.5 90 43.3
ClCG05G017010 Citrullus lanatus HOM05D006429 ORTHO05D008173 2.2e-09 65.5 95 42.1
FAN16G3505 Fragaria x ananassa HOM05D006429 ORTHO05D008173 2.2e-09 65.5 89 48.3
Ciclev10008199m.g Citrus clementina HOM05D006429 ORTHO05D008173 3.7e-09 64.7 89 40.4
COL.COLO4_18834 Corchorus olitorius HOM05D006429 ORTHO05D008173 6.3e-09 63.9 86 43.0
Hund04535 Selenicereus undatus HOM05D006429 ORTHO05D008173 8.2e-09 63.5 94 40.4
Thecc.09G027300 Theobroma cacao HOM05D006429 ORTHO05D008173 1.1e-08 63.2 87 43.7
Eucgr.C02791 Eucalyptus grandis HOM05D006429 ORTHO05D008173 3.1e-08 61.6 88 43.2
Eucgr.C02795 Eucalyptus grandis HOM05D006429 ORTHO05D008173 4.1e-08 61.2 88 43.2
Manes.03G016200 Manihot esculenta HOM05D006429 ORTHO05D008173 5.3e-08 60.8 87 41.4
CiPaw.08G012100 Carya illinoinensis HOM05D006429 ORTHO05D008173 7.0e-08 60.5 88 40.9
QL02p022136 Quercus lobata HOM05D006429 ORTHO05D008173 7.0e-08 60.5 96 40.6
Gohir.D07G031600 Gossypium hirsutum HOM05D006429 ORTHO05D008173 9.1e-08 60.1 87 41.4
Gorai.001G033000 Gossypium raimondii HOM05D006429 ORTHO05D008173 9.1e-08 60.1 87 41.4
GSVIVG01035836001 Vitis vinifera HOM05D006429 ORTHO05D008173 2.0e-07 58.9 87 39.1
Duzib187G0955 Durio zibethinus HOM05D006429 ORTHO05D008173 2.7e-07 58.5 88 40.9
Gohir.A07G027600 Gossypium hirsutum HOM05D006429 ORTHO05D008173 3.5e-07 58.2 87 40.2
Cfa013165 Carpinus fangiana HOM05D006429 ORTHO05D008173 1.0e-06 56.6 94 38.3
Cc08_g00870 Coffea canephora HOM05D006429 ORTHO05D008173 1.0e-06 56.6 89 40.4
Dinv30158 Davidia involucrata HOM05D006429 ORTHO05D008173 1.0e-06 56.6 85 44.7
Nitab4.5_0005761g0120 Nicotiana tabacum HOM05D006429 ORTHO05D008173 1.3e-06 56.2 94 39.4
Rhsim07G0157100 Rhododendron simsii HOM05D006429 ORTHO05D008173 1.3e-06 56.2 89 37.1
Aqoxy7G02159 Aquilegia oxysepala HOM05D006429 ORTHO05D008173 1.7e-06 55.8 89 37.1
PSO170G4475 Papaver somniferum HOM05D006429 ORTHO05D008173 2.2e-06 55.5 89 37.1
PSO455G0002 Papaver somniferum HOM05D006429 ORTHO05D008173 2.2e-06 55.5 89 37.1
SGA_v2.0_scaffold163G37988 Striga asiatica HOM05D006429 ORTHO05D008173 2.2e-06 55.5 89 39.3
MBI01_g37798_MAGBIO Magnolia biondii HOM05D006429 ORTHO05D008173 2.9e-06 55.1 90 42.2
Hma1.2p1_0007F.1_g004980 Hydrangea macrophylla HOM05D006429 ORTHO05D008173 3.8e-06 54.7 89 36.0
Hma1.2p1_0007F.1_g004990 Hydrangea macrophylla HOM05D006429 ORTHO05D008173 3.8e-06 54.7 89 36.0
Phvul.001G051900 Phaseolus vulgaris HOM05D006429 ORTHO05D008173 6.5e-06 53.9 86 43.0
Nitab4.5_0000109g0260 Nicotiana tabacum HOM05D006429 ORTHO05D008173 8.5e-06 53.5 94 38.3
Solyc06g066090.3 Solanum lycopersicum HOM05D006429 ORTHO05D008173 8.5e-06 53.5 94 38.3
Sopen06g024570 Solanum pennellii HOM05D006429 ORTHO05D008173 8.5e-06 53.5 94 38.3


User provided reference genes

Program Settings