Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 1.0e-99 366.7 181 100.0
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.1e-98 363.2 181 98.9
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 3.3e-98 361.7 181 98.3
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 4.3e-90 334.7 178 91.0
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 4.5e-87 324.7 178 88.8
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 2.2e-86 322.4 178 88.2
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 8.5e-86 320.5 178 88.2
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 8.5e-86 320.5 178 87.6
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 2.5e-85 318.9 178 87.6
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 4.2e-85 318.2 178 87.6
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 3.0e-83 312.0 175 86.3
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 3.9e-83 311.6 175 85.7
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 6.7e-83 310.8 178 85.4
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.1e-82 310.1 178 82.6
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 1.1e-82 310.1 175 84.6
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 3.3e-82 308.5 175 85.1
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 9.7e-82 307.0 175 84.6
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 1.3e-81 306.6 174 84.5
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 2.2e-81 305.8 175 83.4
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 2.8e-81 305.4 175 84.0
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 3.7e-81 305.1 172 85.5
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 6.3e-81 304.3 174 82.2
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 8.2e-81 303.9 175 81.7
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 1.1e-80 303.5 174 82.2
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.1e-80 303.5 175 82.9
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.4e-80 303.1 175 81.7
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 1.8e-80 302.8 179 81.0
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.1e-80 302.0 175 81.1
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 3.1e-80 302.0 175 83.4
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 5.3e-80 301.2 178 81.5
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.2e-79 300.1 174 81.0
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 1.2e-79 300.1 175 81.7
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.5e-79 299.7 175 81.1
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 3.4e-79 298.5 178 82.0
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 4.5e-79 298.1 175 81.7
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 7.7e-79 297.4 175 81.7
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 1.3e-78 296.6 175 80.6
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.3e-78 296.6 174 81.0
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.3e-78 296.6 175 81.7
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.7e-78 296.2 177 79.7
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 2.2e-78 295.8 175 82.3
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 2.2e-78 295.8 178 80.3
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 2.9e-78 295.4 175 81.1
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 3.8e-78 295.0 175 81.7
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 6.5e-78 294.3 175 81.1
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 6.5e-78 294.3 175 81.1
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 6.5e-78 294.3 175 80.0
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 8.5e-78 293.9 175 79.4
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 1.9e-77 292.7 178 80.3
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 2.5e-77 292.4 171 82.5
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.5e-77 292.4 175 80.6
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.5e-77 292.4 174 80.5
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 4.2e-77 291.6 175 79.4
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 4.2e-77 291.6 175 80.6
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 4.2e-77 291.6 178 79.2
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 5.5e-77 291.2 178 80.3
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 7.2e-77 290.8 175 80.6
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 7.2e-77 290.8 178 78.7
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 9.4e-77 290.4 174 79.9
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 1.2e-76 290.0 175 78.9
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 1.2e-76 290.0 178 79.8
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 1.2e-76 290.0 175 78.3
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 1.2e-76 290.0 175 78.3
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 1.6e-76 289.7 177 76.8
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 2.1e-76 289.3 175 79.4
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 2.1e-76 289.3 201 72.6
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 3.6e-76 288.5 177 75.7
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 7.9e-76 287.3 174 78.2
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 7.9e-76 287.3 175 76.0
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 1.0e-75 287.0 175 78.9
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 1.0e-75 287.0 178 78.7
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 1.8e-75 286.2 175 78.3
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 2.3e-75 285.8 175 76.0
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 3.0e-75 285.4 175 78.9
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 3.0e-75 285.4 178 78.1
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 3.0e-75 285.4 175 78.3
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 3.9e-75 285.0 175 78.9
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 5.1e-75 284.6 176 80.1
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 5.1e-75 284.6 175 79.4
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 5.1e-75 284.6 173 80.3
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 6.7e-75 284.3 175 77.7
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 8.8e-75 283.9 177 76.3
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 8.8e-75 283.9 178 78.1
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.1e-74 283.5 178 78.1
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 1.1e-74 283.5 178 78.1
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 1.5e-74 283.1 178 79.2
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 2.6e-74 282.3 174 78.2
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 7.4e-74 280.8 177 77.4
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 2.2e-73 279.3 177 77.4
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 2.2e-73 279.3 178 78.7
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 6.3e-73 277.7 175 77.1
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.1e-72 276.9 175 76.0
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 1.2e-71 273.5 176 75.0
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 1.5e-71 273.1 198 70.7
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 4.5e-71 271.6 156 84.6
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 5.9e-71 271.2 184 78.3
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 7.7e-71 270.8 167 78.4
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 6.5e-70 267.7 175 73.7
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.5e-69 265.8 175 73.7
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 2.1e-68 262.7 183 69.9
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 5.2e-67 258.1 175 70.9
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.7e-65 253.1 141 85.8
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 3.1e-64 248.8 142 85.2
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 2.9e-62 242.3 179 67.6
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 3.0e-59 232.3 142 78.2
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 1.7e-57 226.5 174 67.8
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 2.4e-56 222.6 177 62.1
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 4.5e-55 218.4 141 75.9
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 6.3e-41 171.4 175 53.1
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 2.4e-40 169.5 174 48.3
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 5.4e-40 168.3 92 84.8
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 5.0e-38 161.8 171 47.4
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 4.3e-37 158.7 175 48.0
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 1.4e-35 153.7 89 77.5
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 4.4e-34 148.7 138 60.1
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 5.6e-29 131.7 73 84.9
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 4.7e-28 128.6 168 45.2
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 1.1e-24 117.5 73 83.6
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 6.0e-23 111.7 62 88.7
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 2.5e-21 106.3 67 76.1
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 9.9e-18 94.4 57 75.4
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 8.3e-17 91.3 52 84.6
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.5e-15 85.9 54 83.3
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 5.1e-14 82.0 52 76.9
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 5.4e-08 62.0 50 62.0
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 5.4e-08 62.0 60 58.3
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 1.6e-07 60.5 37 70.3
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 7.8e-07 58.2 77 40.3
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 1.3e-06 57.4 44 70.5
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 5.1e-06 55.5 38 63.2


User provided reference genes

Program Settings