Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 6.3e-132 474.2 250 100.0
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.1e-110 402.1 250 86.8
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 4.4e-109 398.3 250 86.4
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 1.1e-107 393.7 250 85.6
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 7.1e-91 337.8 216 84.3
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 1.6e-87 326.6 245 73.1
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.1e-82 309.7 219 77.6
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 5.1e-73 278.5 264 64.0
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 1.5e-61 240.4 241 54.4
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 3.4e-61 239.2 238 56.3
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 5.8e-61 238.4 241 56.8
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 4.9e-60 235.3 237 56.1
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 7.1e-59 231.5 238 52.1
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 2.5e-56 223.0 241 51.9
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 5.7e-56 221.9 241 51.0
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 7.4e-56 221.5 237 51.9
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 1.3e-55 220.7 236 51.3
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 1.4e-54 217.2 241 52.3
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 2.0e-53 213.4 237 51.1
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 3.4e-53 212.6 237 50.6
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 5.9e-53 211.8 238 48.7
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 1.0e-52 211.1 207 53.1
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 1.0e-52 211.1 236 47.9
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 1.7e-52 210.3 245 49.4
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 2.2e-52 209.9 238 48.7
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 8.5e-52 208.0 241 50.6
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 4.6e-50 202.2 213 54.0
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 7.9e-50 201.4 230 51.3
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 1.3e-49 200.7 236 48.3
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 1.8e-49 200.3 201 56.7
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 5.1e-49 198.7 241 49.4
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 8.7e-49 198.0 240 47.9
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 1.9e-48 196.8 243 48.6
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 3.3e-48 196.1 237 47.3
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 7.4e-48 194.9 242 45.9
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 4.1e-46 189.1 244 48.0
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 5.3e-46 188.7 188 59.0
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 5.3e-46 188.7 237 48.9
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 1.2e-45 187.6 241 48.1
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 1.2e-45 187.6 237 46.4
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 1.2e-45 187.6 244 45.1
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 5.9e-45 185.3 300 42.0
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 1.3e-44 184.1 242 45.5
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 1.3e-44 184.1 231 47.6
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 3.8e-44 182.6 242 46.7
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 3.8e-44 182.6 244 46.7
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 5.0e-44 182.2 241 44.4
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 1.1e-43 181.0 239 44.4
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 1.4e-43 180.6 180 56.7
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 3.2e-43 179.5 226 46.5
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 5.5e-43 178.7 241 45.2
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 7.2e-43 178.3 241 44.0
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 9.4e-43 177.9 242 43.8
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 9.4e-43 177.9 266 42.9
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 9.4e-43 177.9 255 43.9
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 2.1e-42 176.8 260 45.8
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 6.1e-42 175.3 237 47.3
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 1.4e-41 174.1 305 39.7
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 1.8e-41 173.7 236 44.9
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 3.0e-41 172.9 239 44.8
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 6.7e-41 171.8 237 43.0
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 8.8e-41 171.4 236 44.5
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 1.5e-40 170.6 236 45.3
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 2.6e-40 169.9 236 44.1
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 3.3e-40 169.5 188 50.5
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 7.4e-40 168.3 188 50.0
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 2.2e-39 166.8 188 51.1
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 2.2e-39 166.8 244 43.9
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 4.1e-38 162.5 236 41.9
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 5.3e-38 162.2 265 41.9
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 9.1e-38 161.4 260 41.2
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 4.5e-37 159.1 242 43.0
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 2.2e-36 156.8 212 45.8
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 1.1e-35 154.5 245 41.2
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 7.2e-35 151.8 234 38.9
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 9.4e-35 151.4 237 41.4
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 1.2e-34 151.0 188 45.7
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 2.7e-34 149.8 191 46.1
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 7.9e-34 148.3 240 40.4
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.0e-33 147.9 296 37.8
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 2.6e-32 143.3 237 40.1
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 7.4e-32 141.7 342 31.6
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 1.1e-30 137.9 118 59.3
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 7.0e-30 135.2 137 54.0
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 7.0e-30 135.2 189 42.9
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 2.6e-29 133.3 125 56.0
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 1.3e-28 131.0 196 43.9
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 7.2e-27 125.2 188 43.6
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 3.0e-25 119.8 245 38.4
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 5.2e-25 119.0 132 53.0
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.2e-24 117.9 228 37.7
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 2.0e-24 117.1 228 36.8
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 9.7e-24 114.8 316 31.3
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 2.4e-22 110.2 137 45.3
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 2.4e-22 110.2 137 45.3
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 7.0e-22 108.6 190 38.9
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 2.7e-21 106.7 230 36.1
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 2.7e-21 106.7 188 41.0
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 9.8e-16 88.2 230 30.9
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 9.8e-16 88.2 148 40.5
TPR.G22099 Trifolium pratense HOM05D007204 ORTHO05D008593 1.7e-07 60.8 130 33.8
SMO358G0161 Selaginella moellendorffii HOM05D007204 ORTHO05D008593 6.3e-07 58.9 134 32.8
Lalb_Chr15g0083181 Lupinus albus HOM05D007204 ORTHO05D008593 7.0e-06 55.5 63 52.4
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 9.2e-06 55.1 53 54.7


User provided reference genes

Program Settings