Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0070821 Rosa chinensis HOM05D006395 ORTHO05D007894 2.1e-67 259.6 212 100.0
RcHm_v2.0_Chr5g0070801 Rosa chinensis HOM05D006395 ORTHO05D007894 5.5e-44 181.8 212 78.3
FvH4_3g39360 Fragaria vesca HOM05D006395 ORTHO05D007894 5.7e-41 171.8 212 67.5
FAN21G1642 Fragaria x ananassa HOM05D006395 ORTHO05D007894 1.7e-40 170.2 212 67.0
FAN11G3343 Fragaria x ananassa HOM05D006395 ORTHO05D007894 3.7e-40 169.1 212 67.0
FAN25G1635 Fragaria x ananassa HOM05D006395 ORTHO05D007894 4.8e-40 168.7 212 67.0
MD03G1062200 Malus domestica HOM05D006395 ORTHO05D007894 3.2e-28 129.4 212 61.3
Prupe.6G052000 Prunus persica HOM05D006395 ORTHO05D007894 4.4e-25 119.0 212 60.8
GSVIVG01024681001 Vitis vinifera HOM05D006395 ORTHO05D007894 6.3e-24 115.2 212 63.7
Actinidia27062 Actinidia chinensis HOM05D006395 ORTHO05D007894 1.1e-23 114.4 209 64.1
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 1.1e-23 114.4 212 60.4
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 1.4e-23 114.0 212 63.7
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 4.1e-23 112.5 212 63.2
Duzib168G0704 Durio zibethinus HOM05D006395 ORTHO05D007894 5.4e-23 112.1 212 51.9
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 9.1e-23 111.3 211 63.5
MBI15_g36485_MAGBIO Magnolia biondii HOM05D006395 ORTHO05D007894 2.0e-22 110.2 208 64.4
Psat5g157120 Pisum sativum HOM05D006395 ORTHO05D007894 3.5e-22 109.4 212 55.2
MSTRG.21234 Avicennia marina HOM05D006395 ORTHO05D007894 7.7e-22 108.2 210 61.9
Thecc.09G354500 Theobroma cacao HOM05D006395 ORTHO05D007894 7.7e-22 108.2 206 61.2
Atru.chr3.4150 Acer truncatum HOM05D006395 ORTHO05D007894 1.0e-21 107.8 212 61.3
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 1.0e-21 107.8 212 58.5
Eucgr.B02227 Eucalyptus grandis HOM05D006395 ORTHO05D007894 1.0e-21 107.8 212 57.1
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 1.0e-21 107.8 213 54.0
Potri.001G280500 Populus trichocarpa HOM05D006395 ORTHO05D007894 1.0e-21 107.8 210 57.6
Manes.18G144200 Manihot esculenta HOM05D006395 ORTHO05D007894 1.7e-21 107.1 212 60.4
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 2.2e-21 106.7 210 59.5
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 3.8e-21 105.9 212 62.7
PSO170G0213 Papaver somniferum HOM05D006395 ORTHO05D007894 5.0e-21 105.5 217 55.8
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 8.5e-21 104.8 212 62.3
Migut.D00855 Erythranthe guttata HOM05D006395 ORTHO05D007894 1.1e-20 104.4 63 77.8
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 1.5e-20 104.0 212 61.8
Lj6g0016849 Lotus japonicus HOM05D006395 ORTHO05D007894 1.5e-20 104.0 212 59.0
CiPaw.13G072800 Carya illinoinensis HOM05D006395 ORTHO05D007894 1.9e-20 103.6 63 76.2
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 1.9e-20 103.6 212 60.8
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 1.9e-20 103.6 212 53.8
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 3.2e-20 102.8 210 52.9
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 4.2e-20 102.4 210 50.5
Cpa.g.sc2.390 Carica papaya HOM05D006395 ORTHO05D007894 5.5e-20 102.1 212 59.9
Glyma.18G059000 Glycine max HOM05D006395 ORTHO05D007894 9.4e-20 101.3 219 49.8
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 9.4e-20 101.3 211 61.1
Hma1.2p1_0841F.1_g226810 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 1.6e-19 100.5 209 58.9
Hma1.2p1_0841F.1_g226820 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 1.6e-19 100.5 209 58.9
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 1.6e-19 100.5 212 63.7
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 2.1e-19 100.1 63 73.0
Ciclev10028704m.g Citrus clementina HOM05D006395 ORTHO05D007894 2.1e-19 100.1 212 57.5
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 2.1e-19 100.1 212 60.4
PSO017G1403 Papaver somniferum HOM05D006395 ORTHO05D007894 2.1e-19 100.1 210 56.2
Carub.0004s1124 Capsella rubella HOM05D006395 ORTHO05D007894 2.7e-19 99.8 61 77.0
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 3.6e-19 99.4 63 74.6
Thhalv10016813m.g Eutrema salsugineum HOM05D006395 ORTHO05D007894 1.0e-18 97.8 63 73.0
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 1.4e-18 97.4 60 75.0
VMungo0540G1476 Vigna mungo HOM05D006395 ORTHO05D007894 1.8e-18 97.1 212 60.8
Sp4g12670 Schrenkiella parvula HOM05D006395 ORTHO05D007894 2.3e-18 96.7 61 73.8
BraA04t17818Z Brassica rapa HOM05D006395 ORTHO05D007894 3.0e-18 96.3 63 71.4
TPR.G32918 Trifolium pratense HOM05D006395 ORTHO05D007894 3.0e-18 96.3 212 60.4
HPP92_025106 Vanilla planifolia HOM05D006395 ORTHO05D007894 3.0e-18 96.3 61 75.4
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 4.0e-18 95.9 63 71.4
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 4.0e-18 95.9 60 73.3
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 4.0e-18 95.9 212 57.5
EL10Ac7g15889 Beta vulgaris HOM05D006395 ORTHO05D007894 5.2e-18 95.5 210 55.2
BcaC02g08052 Brassica carinata HOM05D006395 ORTHO05D007894 5.2e-18 95.5 63 71.4
C04p58990 Brassica napus HOM05D006395 ORTHO05D007894 5.2e-18 95.5 63 71.4
A04p22790 Brassica napus HOM05D006395 ORTHO05D007894 6.8e-18 95.1 61 72.1
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 6.8e-18 95.1 212 60.4
BcaB06g28340 Brassica carinata HOM05D006395 ORTHO05D007894 8.8e-18 94.7 209 59.8
Medtr3g465570 Medicago truncatula HOM05D006395 ORTHO05D007894 8.8e-18 94.7 206 52.4
Lalb_Chr18g0051251 Lupinus albus HOM05D006395 ORTHO05D007894 1.2e-17 94.4 212 50.9
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 1.2e-17 94.4 63 69.8
arahy.Tifrunner.gnm1.ann1.775QX7 Arachis hypogaea HOM05D006395 ORTHO05D007894 1.5e-17 94.0 64 71.9
arahy.Tifrunner.gnm1.ann1.P58CS4 Arachis hypogaea HOM05D006395 ORTHO05D007894 1.5e-17 94.0 64 71.9
BcaC02g08055 Brassica carinata HOM05D006395 ORTHO05D007894 1.5e-17 94.0 209 54.1
Cc03_g12890 Coffea canephora HOM05D006395 ORTHO05D007894 2.0e-17 93.6 63 69.8
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 2.0e-17 93.6 212 59.9
CDE12G0063 Ceratophyllum demersum HOM05D006395 ORTHO05D007894 2.6e-17 93.2 208 58.7
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 2.6e-17 93.2 210 56.7
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 2.6e-17 93.2 60 73.3
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 9.8e-17 91.3 64 64.1
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 9.8e-17 91.3 209 57.4
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 1.7e-16 90.5 63 69.8
unitig_0.g1179 Utricularia gibba HOM05D006395 ORTHO05D007894 1.7e-16 90.5 208 62.5
AUR62036248 Chenopodium quinoa HOM05D006395 ORTHO05D007894 2.8e-16 89.7 212 47.6
Aqoxy1G01323 Aquilegia oxysepala HOM05D006395 ORTHO05D007894 3.7e-16 89.4 62 69.4
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 4.9e-16 89.0 212 58.0
FAN16G1183 Fragaria x ananassa HOM05D006395 ORTHO05D007894 6.3e-16 88.6 49 91.8
Aa31LG5G6570 Aethionema arabicum HOM05D006395 ORTHO05D007894 8.3e-16 88.2 61 67.2
PSO782G5619 Papaver somniferum HOM05D006395 ORTHO05D007894 1.4e-15 87.4 62 67.7
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 3.1e-15 86.3 206 54.4
Lsat_1_v5_gn_8_111040 Lactuca sativa HOM05D006395 ORTHO05D007894 3.1e-15 86.3 63 66.7
AUR62009698 Chenopodium quinoa HOM05D006395 ORTHO05D007894 1.2e-14 84.3 212 58.0
THA.LOC104800755 Tarenaya hassleriana HOM05D006395 ORTHO05D007894 2.0e-14 83.6 210 57.1
HanXRQChr05g0130471 Helianthus annuus HOM05D006395 ORTHO05D007894 3.5e-14 82.8 65 66.2
ECA236G5129 Erigeron canadensis HOM05D006395 ORTHO05D007894 4.5e-14 82.4 62 64.5
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 5.9e-14 82.0 111 42.3
FAN06G1459 Fragaria x ananassa HOM05D006395 ORTHO05D007894 7.7e-14 81.6 106 47.2
PSO339G4463 Papaver somniferum HOM05D006395 ORTHO05D007894 1.1e-12 77.8 53 67.9
SEGI_40979 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 1.6e-11 73.9 208 43.3
CAN.G241.12 Capsicum annuum HOM05D006395 ORTHO05D007894 2.1e-11 73.6 68 57.4
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 3.6e-11 72.8 207 47.8
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 1.5e-09 67.4 184 47.8
PSO675G0236 Papaver somniferum HOM05D006395 ORTHO05D007894 9.8e-09 64.7 94 42.6
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 1.3e-08 64.3 62 51.6
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 1.7e-08 63.9 210 42.9
Actinidia23216 Actinidia chinensis HOM05D006395 ORTHO05D007894 3.7e-08 62.8 48 70.8
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 6.4e-08 62.0 113 34.5
FAN07G0114 Fragaria x ananassa HOM05D005731 ORTHO05D012104 8.3e-08 61.6 32 87.5
CSS0046123 Camellia sinensis var. sinensis HOM05D006395 ORTHO05D007894 5.4e-07 58.9 53 58.5
TWI31G1172 Tripterygium wilfordii HOM05D006395 ORTHO05D007894 5.4e-07 58.9 50 62.0
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 1.2e-06 57.8 48 66.7


User provided reference genes

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