Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0070641 Rosa chinensis HOM05D005331 ORTHO05D007596 1.3e-120 436.4 217 100.0
RcHm_v2.0_Chr6g0291131 Rosa chinensis HOM05D005331 ORTHO05D007596 1.0e-37 161.0 120 72.5
Prupe.8G241800 Prunus persica HOM05D005331 ORTHO05D007596 7.4e-36 154.8 120 69.2
CsaV3_6G037090 Cucumis sativus L. HOM05D005331 ORTHO05D007596 8.1e-35 151.4 124 63.7
MD11G1286500 Malus domestica HOM05D005331 ORTHO05D007596 8.1e-35 151.4 168 55.4
QL12p021971 Quercus lobata HOM05D005331 ORTHO05D007596 8.1e-35 151.4 99 76.8
Gohir.A12G005400 Gossypium hirsutum HOM05D005331 ORTHO05D007596 1.1e-34 151.0 182 51.1
Gorai.008G004800 Gossypium raimondii HOM05D005331 ORTHO05D007596 1.1e-34 151.0 182 51.1
Sed0009831 Sechium edule HOM05D005331 ORTHO05D007596 1.1e-34 151.0 169 53.8
MD03G1266100 Malus domestica HOM05D005331 ORTHO05D007596 1.8e-34 150.2 120 65.8
Manes.05G075600 Manihot esculenta HOM05D005331 ORTHO05D007596 3.1e-34 149.4 158 52.5
COL.COLO4_09103 Corchorus olitorius HOM05D005331 ORTHO05D007596 4.0e-34 149.1 120 64.2
Duzib138G0982 Durio zibethinus HOM05D005331 ORTHO05D007596 6.9e-34 148.3 159 55.3
Gohir.D12G004900 Gossypium hirsutum HOM05D005331 ORTHO05D007596 6.9e-34 148.3 182 50.5
Nn1g02210 Nelumbo nucifera HOM05D005331 ORTHO05D007596 6.9e-34 148.3 120 65.0
ClCG07G000230 Citrullus lanatus HOM05D005331 ORTHO05D007596 9.0e-34 147.9 124 62.9
Haze_04717 Corylus avellana HOM05D005331 ORTHO05D007596 9.0e-34 147.9 120 64.2
CSS0010605 Camellia sinensis var. sinensis HOM05D005331 ORTHO05D007596 1.2e-33 147.5 120 64.2
CSS0033819 Camellia sinensis var. sinensis HOM05D005331 ORTHO05D007596 1.2e-33 147.5 120 64.2
Cpa.g.sc52.30 Carica papaya HOM05D005331 ORTHO05D007596 1.2e-33 147.5 120 64.2
MELO3C014403.2 Cucumis melo HOM05D005331 ORTHO05D007596 1.2e-33 147.5 124 62.9
Thecc.01G280200 Theobroma cacao HOM05D005331 ORTHO05D007596 1.5e-33 147.1 120 64.2
CANSAT25G3094 Cannabis sativa HOM05D005331 ORTHO05D007596 2.0e-33 146.7 161 52.2
PSO170G4087 Papaver somniferum HOM05D005331 ORTHO05D007596 2.6e-33 146.4 120 65.8
PSO302G0146 Papaver somniferum HOM05D005331 ORTHO05D007596 2.6e-33 146.4 120 65.8
TAR633G1479 Trochodendron aralioides HOM05D005331 ORTHO05D007596 2.6e-33 146.4 120 64.2
Ciclev10023848m.g Citrus clementina HOM05D005331 ORTHO05D007596 3.4e-33 146.0 177 52.0
Glyma.03G153100 Glycine max HOM05D005331 ORTHO05D007596 3.4e-33 146.0 167 53.9
Atru.chr5.1429 Acer truncatum HOM05D005331 ORTHO05D007596 4.5e-33 145.6 109 67.0
Actinidia24888 Actinidia chinensis HOM05D005331 ORTHO05D007596 5.8e-33 145.2 109 67.9
Lj1g0019807 Lotus japonicus HOM05D005331 ORTHO05D007596 1.0e-32 144.4 121 63.6
Lalb_Chr01g0013751 Lupinus albus HOM05D005331 ORTHO05D007596 2.2e-32 143.3 124 60.5
Phvul.001G150500 Phaseolus vulgaris HOM05D005331 ORTHO05D007596 2.2e-32 143.3 110 67.3
GSVIVG01011128001 Vitis vinifera HOM05D005331 ORTHO05D007596 2.2e-32 143.3 120 61.7
Cc01_g19540 Coffea canephora HOM05D005331 ORTHO05D007596 2.9e-32 142.9 109 67.0
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 2.9e-32 142.9 139 60.4
EL10Ac4g08368 Beta vulgaris HOM05D005331 ORTHO05D007596 3.8e-32 142.5 146 54.8
TPR.G6149 Trifolium pratense HOM05D005331 ORTHO05D007596 4.9e-32 142.1 129 58.9
VMungo1383G2522 Vigna mungo HOM05D005331 ORTHO05D007596 4.9e-32 142.1 156 54.5
arahy.Tifrunner.gnm1.ann1.Z72PTZ Arachis hypogaea HOM05D005331 ORTHO05D007596 8.4e-32 141.4 120 60.8
Thhalv10016447m.g Eutrema salsugineum HOM05D005331 ORTHO05D007596 8.4e-32 141.4 120 60.8
THA.LOC104817518 Tarenaya hassleriana HOM05D005331 ORTHO05D007596 1.1e-31 141.0 120 60.8
CDE04G0111 Ceratophyllum demersum HOM05D005331 ORTHO05D007596 1.4e-31 140.6 99 69.7
AUR62018058 Chenopodium quinoa HOM05D005331 ORTHO05D007596 1.9e-31 140.2 146 54.8
Psat3g064480 Pisum sativum HOM05D005331 ORTHO05D007596 1.9e-31 140.2 129 59.7
BcaB01g04039 Brassica carinata HOM05D005331 ORTHO05D007596 2.5e-31 139.8 120 59.2
CARHR125170 Cardamine hirsuta HOM05D005331 ORTHO05D007596 2.5e-31 139.8 112 63.4
Sp4g13980 Schrenkiella parvula HOM05D005331 ORTHO05D007596 3.2e-31 139.4 120 59.2
BcaC01g05946 Brassica carinata HOM05D005331 ORTHO05D007596 4.2e-31 139.0 120 58.3
A03p17680 Brassica napus HOM05D005331 ORTHO05D007596 4.2e-31 139.0 120 58.3
C03p20770 Brassica napus HOM05D005331 ORTHO05D007596 4.2e-31 139.0 120 58.3
BraA03t11033Z Brassica rapa HOM05D005331 ORTHO05D007596 4.2e-31 139.0 120 58.3
AUR62015257 Chenopodium quinoa HOM05D005331 ORTHO05D007596 4.2e-31 139.0 146 54.1
Migut.N02164 Erythranthe guttata HOM05D005331 ORTHO05D007596 4.2e-31 139.0 109 63.3
Sopen09g026840 Solanum pennellii HOM05D005331 ORTHO05D007596 4.2e-31 139.0 150 53.3
Carub.0004s1284 Capsella rubella HOM05D005331 ORTHO05D007596 5.5e-31 138.7 112 62.5
Ca_08578_v3 Cicer arietinum L. HOM05D005331 ORTHO05D007596 5.5e-31 138.7 110 64.5
Eucgr.K03374 Eucalyptus grandis HOM05D005331 ORTHO05D007596 5.5e-31 138.7 128 56.2
PGR044G2121 Punica granatum HOM05D005331 ORTHO05D007596 5.5e-31 138.7 109 63.3
Nitab4.5_0010448g0040 Nicotiana tabacum HOM05D005331 ORTHO05D007596 7.1e-31 138.3 109 63.3
Sabra02G0043800 Salix brachista HOM05D005331 ORTHO05D007596 7.1e-31 138.3 182 47.8
AT2G31530 Arabidopsis thaliana HOM05D005331 ORTHO05D007596 9.3e-31 137.9 109 63.3
TWI14G1044 Tripterygium wilfordii HOM05D005331 ORTHO05D007596 9.3e-31 137.9 139 54.7
ATR0626G344 Amborella trichopoda HOM05D005331 ORTHO05D007596 1.2e-30 137.5 128 55.5
AL4G26780 Arabidopsis lyrata HOM05D005331 ORTHO05D007596 1.2e-30 137.5 109 63.3
Medtr7g094800 Medicago truncatula HOM05D005331 ORTHO05D007596 1.2e-30 137.5 129 58.9
Sc24g0003040 Simmondsia chinensis HOM05D005331 ORTHO05D007596 1.2e-30 137.5 99 68.7
Peaxi162Scf01622g00017 Petunia axillaris HOM05D005331 ORTHO05D007596 1.6e-30 137.1 88 72.7
DCAR_032170 Daucus carota HOM05D005331 ORTHO05D007596 2.1e-30 136.7 123 58.5
Potri.002G053900 Populus trichocarpa HOM05D005331 ORTHO05D007596 2.1e-30 136.7 139 55.4
Solyc09g065120.4 Solanum lycopersicum HOM05D005331 ORTHO05D007596 2.7e-30 136.3 124 57.3
HPP92_001334 Vanilla planifolia HOM05D005331 ORTHO05D007596 2.7e-30 136.3 112 59.8
Aqoxy2G03313 Aquilegia oxysepala HOM05D005331 ORTHO05D007596 6.0e-30 135.2 109 64.2
HanXRQChr10g0282731 Helianthus annuus HOM05D005331 ORTHO05D007596 1.3e-29 134.0 109 59.6
Lsat_1_v5_gn_9_3840 Lactuca sativa HOM05D005331 ORTHO05D007596 1.3e-29 134.0 109 59.6
SGA_v2.0_scaffold81G25989 Striga asiatica HOM05D005331 ORTHO05D007596 1.8e-29 133.7 109 59.6
CiPaw.08G104900 Carya illinoinensis HOM05D005331 ORTHO05D007596 2.3e-29 133.3 99 67.7
ECA247G2661 Erigeron canadensis HOM05D005331 ORTHO05D007596 2.3e-29 133.3 122 57.4
HanXRQChr13g0386871 Helianthus annuus HOM05D005331 ORTHO05D007596 2.3e-29 133.3 109 58.7
vmacro14920 Vaccinium macrocarpon HOM05D005331 ORTHO05D007596 1.9e-28 130.2 83 74.7
Ah.04g164200 Amaranthus hybridus HOM05D005331 ORTHO05D007596 3.3e-28 129.4 118 58.5
BolC3t14446H Brassica oleracea HOM05D005331 ORTHO05D007596 3.3e-28 129.4 132 53.0
Aa31LG5G5400 Aethionema arabicum HOM05D005331 ORTHO05D007596 5.7e-28 128.6 122 56.6
Rhsim01G0275000 Rhododendron simsii HOM05D005331 ORTHO05D007596 5.7e-28 128.6 104 62.5
DCAR_012471 Daucus carota HOM05D005331 ORTHO05D007596 1.6e-27 127.1 140 52.1
Lj2A469T42 Lonicera japonica HOM05D005331 ORTHO05D007596 1.1e-26 124.4 109 57.8
Os05g0397700 Oryza sativa ssp. japonica HOM05D005331 ORTHO05D007596 1.0e-24 117.9 125 51.2
Nitab4.5_0001028g0020 Nicotiana tabacum HOM05D005331 ORTHO05D007596 3.8e-24 115.9 146 47.3
arahy.Tifrunner.gnm1.ann1.BTF7DQ Arachis hypogaea HOM05D005331 ORTHO05D007596 5.0e-24 115.5 142 47.9
Pp3c15_8820 Physcomitrium patens HOM05D005331 ORTHO05D007596 5.0e-24 115.5 126 46.0
CAN.G567.46 Capsicum annuum HOM05D005331 ORTHO05D007596 1.4e-23 114.0 95 62.1
Zm00001eb287470 Zea mays HOM05D005331 ORTHO05D007596 2.5e-23 113.2 106 53.8
Mapoly0002s0128 Marchantia polymorpha HOM05D005331 ORTHO05D007596 1.2e-22 110.9 128 44.5
AagrBONN_evm.TU.Sc2ySwM_344.2919 Anthoceros agrestis HOM05D005331 ORTHO05D007596 1.6e-22 110.5 128 43.0
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.5e-20 104.0 122 54.1
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 4.3e-20 102.4 148 45.9
Hund10478 Selenicereus undatus HOM05D005331 ORTHO05D007596 8.2e-19 98.2 120 46.7
Oeu028078.2 Olea europaea HOM05D005331 ORTHO05D007596 1.4e-18 97.4 225 33.3
Actinidia21109 Actinidia chinensis HOM05D005331 ORTHO05D007596 5.3e-18 95.5 108 50.0
CBR_g25857 Chara braunii HOM05D005331 ORTHO05D007596 2.9e-16 89.7 109 39.4
SalBow6G0673 Salvia bowleyana HOM05D005331 ORTHO05D007596 7.2e-15 85.1 125 41.6
FvH4_2g23670 Fragaria vesca HOM05D005331 ORTHO05D007596 2.3e-13 80.1 55 74.5
Glyma.19G155500 Glycine max HOM05D005331 ORTHO05D007596 9.1e-10 68.2 108 45.4
SMO275G0046 Selaginella moellendorffii HOM05D005331 ORTHO05D007596 7.7e-09 65.1 88 38.6
Dinv34748 Davidia involucrata HOM05D005331 ORTHO05D007596 2.2e-08 63.5 46 69.6
unitig_744.g24627 Utricularia gibba HOM05D005331 ORTHO05D007596 1.4e-07 60.8 72 38.9
HPP92_001779 Vanilla planifolia HOM05D005331 ORTHO05D018710 7.9e-06 55.1 92 39.1


User provided reference genes

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