Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 1.8e-213 745.7 400 100.0
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.8e-176 622.9 404 83.2
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.4e-173 612.5 404 82.2
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.8e-171 605.1 404 81.7
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 1.2e-156 557.0 404 76.7
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.7e-155 553.1 404 76.2
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 4.7e-97 359.0 403 59.3
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 9.6e-82 308.1 403 55.1
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 1.5e-79 300.8 391 52.9
FAN21G2890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.4e-64 250.4 157 83.4
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.2e-63 248.1 420 46.0
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.8e-59 234.2 420 44.0
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 2.3e-59 233.8 455 42.2
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 5.9e-55 219.2 457 40.7
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 3.6e-52 209.9 439 40.1
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 3.9e-51 206.5 438 39.5
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 7.4e-50 202.2 446 38.1
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 4.1e-48 196.4 436 41.1
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 6.5e-46 189.1 448 38.6
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.5e-45 187.2 447 38.5
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 9.4e-45 185.3 407 38.1
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.2e-44 184.9 441 38.1
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 4.7e-44 183.0 436 36.9
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 1.0e-43 181.8 439 37.8
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 2.3e-43 180.6 449 36.5
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.5e-42 177.9 404 37.4
FAN21G2593 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.3e-42 176.8 120 78.3
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 9.7e-42 175.3 378 40.2
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.4e-40 170.6 408 40.0
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 1.6e-39 167.9 404 38.6
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.6e-39 167.2 434 36.2
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 3.5e-39 166.8 406 38.9
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.7e-38 164.5 384 36.5
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.5e-37 161.4 412 36.4
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 7.2e-37 159.1 374 38.0
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 1.8e-35 154.5 406 37.9
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 1.2e-34 151.8 403 35.2
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 1.1e-32 145.2 375 36.8
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.4e-32 144.8 412 31.1
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 2.4e-32 144.1 430 35.1
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 5.3e-32 142.9 393 33.3
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 5.3e-32 142.9 398 37.2
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 9.1e-32 142.1 416 35.3
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.2e-31 141.7 399 35.6
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.6e-31 141.4 409 31.3
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 1.6e-31 141.4 424 35.8
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 2.7e-31 140.6 427 34.4
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 5.9e-31 139.4 406 34.0
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 5.9e-31 139.4 432 33.1
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 2.2e-30 137.5 415 35.7
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 2.9e-30 137.1 400 34.8
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 2.9e-30 137.1 382 35.3
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 3.8e-30 136.7 394 37.1
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 3.8e-30 136.7 417 35.5
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 5.0e-30 136.3 436 33.0
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 6.5e-30 136.0 381 32.3
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 1.1e-29 135.2 378 32.0
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 2.5e-29 134.0 445 33.7
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 3.2e-29 133.7 405 34.8
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 3.6e-28 130.2 273 41.0
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.0e-27 128.6 444 35.1
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 2.3e-27 127.5 422 33.2
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 2.3e-27 127.5 370 32.7
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 2.3e-27 127.5 389 32.6
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 3.4e-26 123.6 452 34.7
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 5.7e-26 122.9 307 34.5
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 1.7e-25 121.3 368 33.4
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 6.3e-25 119.4 390 35.4
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 1.2e-23 115.2 390 31.8
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 1.6e-23 114.8 455 33.0
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 7.7e-23 112.5 380 32.9
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 6.5e-22 109.4 396 33.6
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 1.2e-20 105.1 405 29.4
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 1.2e-20 105.1 323 34.7
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.1e-20 104.4 415 30.6
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 2.8e-20 104.0 400 33.0
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 2.8e-20 104.0 379 33.0
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.8e-20 104.0 420 30.5
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 6.1e-20 102.8 433 31.4
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 6.1e-20 102.8 386 34.7
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 1.8e-19 101.3 403 29.8
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 2.3e-19 100.9 385 29.6
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 4.0e-19 100.1 409 31.5
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 5.2e-19 99.8 393 29.5
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 5.2e-19 99.8 405 29.6
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 8.8e-19 99.0 372 30.9
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 8.8e-19 99.0 409 29.1
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 2.0e-18 97.8 290 33.4
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.4e-18 97.1 406 30.5
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 9.8e-18 95.5 286 33.6
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 4.9e-17 93.2 183 39.3
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 4.9e-17 93.2 403 26.3
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 2.4e-16 90.9 207 42.5
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 7.0e-16 89.4 382 27.0
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 9.2e-16 89.0 408 29.4
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 1.6e-15 88.2 408 29.7
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 2.0e-15 87.8 406 26.8
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 3.5e-15 87.0 314 33.4
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.5e-15 86.7 259 35.9
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 5.9e-15 86.3 364 27.7
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 7.8e-15 85.9 359 28.7
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 1.0e-14 85.5 320 29.4
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.3e-14 85.1 331 30.2
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 1.7e-14 84.7 373 30.6
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.7e-14 84.7 390 28.2
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 2.3e-14 84.3 363 28.4
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 2.9e-14 84.0 402 25.9
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 2.9e-14 84.0 362 30.4
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 2.9e-14 84.0 374 29.7
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 2.9e-14 84.0 367 29.7
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 3.8e-14 83.6 426 26.5
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 5.0e-14 83.2 217 37.3
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 5.0e-14 83.2 373 30.0
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 5.0e-14 83.2 373 30.0
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 1.5e-13 81.6 153 38.6
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.9e-13 81.3 300 28.7
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.3e-13 80.1 399 26.1
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 7.3e-13 79.3 415 29.9
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 9.5e-13 79.0 377 28.1
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 9.5e-13 79.0 388 29.1
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.2e-12 78.6 390 28.2
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 1.6e-12 78.2 397 31.0
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.6e-12 78.2 393 25.7
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 1.6e-12 78.2 392 29.3
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 1.6e-12 78.2 237 31.2
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 2.1e-12 77.8 310 31.6
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.1e-12 77.8 399 24.1
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 2.8e-12 77.4 403 28.3
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 3.6e-12 77.0 124 42.7
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.6e-12 77.0 407 24.1
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 6.1e-12 76.3 372 28.0
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 6.1e-12 76.3 392 27.6
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 8.0e-12 75.9 368 27.7
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 1.0e-11 75.5 324 30.2
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 1.4e-11 75.1 405 25.2
Psat2g057960 Pisum sativum HOM05D003726 ORTHO05D003520 1.4e-11 75.1 383 30.3
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 1.8e-11 74.7 340 28.5
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 1.8e-11 74.7 340 28.5
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 2.3e-11 74.3 298 29.5
SalBow2G1798 Salvia bowleyana HOM05D003726 ORTHO05D003520 3.0e-11 73.9 363 27.8
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 4.0e-11 73.6 382 28.3
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 8.9e-11 72.4 387 27.9
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.2e-10 72.0 214 31.3
MSTRG.12680 Avicennia marina HOM05D003726 ORTHO05D003520 2.0e-10 71.2 378 27.5
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 2.0e-10 71.2 361 27.4
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 3.4e-10 70.5 398 29.9
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 7.5e-10 69.3 302 29.8
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 9.8e-10 68.9 383 25.6
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 1.3e-09 68.6 326 27.3
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.2e-09 67.8 341 29.9
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 3.7e-09 67.0 341 29.6
TAR636G2889 Trochodendron aralioides HOM05D003726 ORTHO05D003520 4.9e-09 66.6 178 38.8
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 6.4e-09 66.2 370 28.1
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 1.4e-08 65.1 136 37.5
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 2.4e-08 64.3 351 30.2
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 4.1e-08 63.5 338 28.4
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 4.1e-08 63.5 352 28.4
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 5.4e-08 63.2 401 26.9
Ca_05609_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 5.4e-08 63.2 234 34.6
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 5.4e-08 63.2 156 32.7
HPP92_013884 Vanilla planifolia HOM05D003726 ORTHO05D003520 5.4e-08 63.2 252 30.6
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 9.2e-08 62.4 395 26.6
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 2.0e-07 61.2 157 34.4
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 2.0e-07 61.2 205 33.2
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 2.7e-07 60.8 315 28.6
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 3.5e-07 60.5 370 26.2
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 4.6e-07 60.1 409 25.2
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 4.6e-07 60.1 409 25.2
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 4.6e-07 60.1 260 33.5
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 5.0e-06 56.6 362 27.3


User provided reference genes

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