Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 2.7e-152 542.0 271 100.0
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 3.2e-113 412.1 270 77.8
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 4.2e-113 411.8 270 77.4
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 7.9e-112 407.5 270 77.0
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 8.7e-111 404.1 270 76.3
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.1e-109 399.4 271 76.0
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 2.7e-96 355.9 269 71.4
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 9.7e-94 347.4 269 67.7
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 1.6e-88 330.1 266 65.8
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 4.4e-86 322.0 262 63.0
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 1.3e-85 320.5 271 63.5
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 1.2e-83 313.9 274 62.4
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.3e-82 310.5 265 61.5
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 9.4e-81 304.3 261 60.9
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 3.0e-79 299.3 266 59.4
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 5.2e-79 298.5 271 60.1
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 6.7e-79 298.1 266 57.9
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 6.7e-79 298.1 271 60.5
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 1.1e-78 297.4 269 60.6
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 5.7e-78 295.0 272 59.2
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 2.8e-77 292.7 263 60.1
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 4.8e-77 292.0 267 58.4
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 4.1e-76 288.9 261 57.9
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 5.3e-76 288.5 266 59.8
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 9.1e-76 287.7 348 50.0
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 2.0e-75 286.6 258 60.1
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 1.7e-74 283.5 233 63.5
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 2.9e-74 282.7 261 57.9
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 3.8e-74 282.3 269 59.5
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 3.2e-73 279.3 267 58.8
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 4.2e-73 278.9 236 61.4
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 9.4e-73 277.7 271 55.7
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 9.4e-73 277.7 287 54.7
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 2.1e-72 276.6 270 57.4
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.1e-72 276.6 269 56.9
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 3.6e-72 275.8 268 57.1
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 6.1e-72 275.0 270 57.4
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 8.0e-72 274.6 269 56.5
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 1.0e-71 274.2 269 58.4
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 1.0e-71 274.2 261 57.9
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 2.3e-71 273.1 268 57.1
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 4.4e-70 268.9 265 55.5
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 7.5e-70 268.1 265 53.6
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 1.7e-69 266.9 267 56.2
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 2.2e-69 266.5 285 54.0
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 2.2e-69 266.5 263 57.0
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 2.8e-69 266.2 224 62.5
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 6.3e-69 265.0 263 55.9
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 6.3e-69 265.0 263 56.3
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 3.1e-68 262.7 267 55.1
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 4.1e-68 262.3 245 57.6
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 5.3e-68 261.9 267 53.9
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 9.1e-68 261.2 266 52.6
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 1.6e-67 260.4 258 55.0
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.0e-67 260.0 258 56.2
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.0e-67 260.0 258 56.2
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 2.7e-67 259.6 258 56.2
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 4.5e-67 258.8 267 56.9
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 7.7e-67 258.1 266 52.6
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 1.0e-66 257.7 262 54.2
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 1.0e-66 257.7 261 54.4
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 1.3e-66 257.3 259 55.6
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 1.7e-66 256.9 264 54.9
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 2.2e-66 256.5 263 54.4
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 2.9e-66 256.1 229 59.8
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 5.0e-66 255.4 269 53.5
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 6.5e-66 255.0 220 61.8
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 2.1e-64 250.0 220 60.0
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 2.7e-64 249.6 258 54.3
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 3.0e-63 246.1 261 52.5
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 6.8e-63 245.0 258 53.9
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 1.2e-62 244.2 274 51.8
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 3.4e-62 242.7 299 47.5
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 7.5e-62 241.5 268 49.6
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 2.2e-61 240.0 247 55.5
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 6.3e-61 238.4 271 49.8
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 8.3e-61 238.0 208 62.5
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 1.6e-59 233.8 271 49.1
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 2.7e-59 233.0 230 55.7
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 1.7e-58 230.3 258 51.6
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 1.1e-57 227.6 233 56.7
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 2.5e-57 226.5 214 56.5
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 2.5e-57 226.5 217 58.5
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 1.8e-55 220.3 263 51.7
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 1.3e-53 214.2 272 47.8
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 2.3e-50 203.4 232 50.0
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 2.9e-50 203.0 218 56.4
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 2.9e-50 203.0 265 47.5
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 1.5e-49 200.7 261 45.6
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 4.3e-49 199.1 280 46.1
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 4.3e-49 199.1 280 46.1
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 1.2e-48 197.6 263 46.4
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 2.8e-48 196.4 261 46.7
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 3.6e-48 196.1 263 46.4
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 3.6e-48 196.1 224 53.1
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 4.7e-48 195.7 366 36.9
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 1.0e-47 194.5 261 46.7
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 3.0e-47 193.0 261 46.0
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 1.5e-46 190.7 270 46.3
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 1.5e-46 190.7 270 46.3
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 2.0e-46 190.3 259 43.2
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 2.0e-46 190.3 154 64.9
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 3.4e-46 189.5 261 44.8
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 1.7e-45 187.2 276 45.3
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 4.9e-45 185.7 262 44.7
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 2.4e-44 183.3 262 44.3
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 4.1e-44 182.6 217 51.2
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 6.0e-43 178.7 175 56.6
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 5.0e-42 175.6 230 48.7
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 1.9e-41 173.7 116 74.1
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 4.3e-41 172.6 161 58.4
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 7.3e-41 171.8 155 59.4
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 1.8e-39 167.2 94 89.4
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 1.1e-31 141.4 94 73.4
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 4.0e-31 139.4 180 45.6
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 2.2e-29 133.7 158 49.4
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 1.4e-28 131.0 187 42.2
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 4.1e-28 129.4 126 57.9
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 2.5e-25 120.2 72 83.3
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 3.3e-25 119.8 73 80.8
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 3.6e-24 116.3 180 40.0
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 3.4e-22 109.8 190 38.4
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 3.2e-20 103.2 149 40.9
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 4.2e-20 102.8 72 69.4
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 2.1e-19 100.5 213 34.7
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 1.1e-17 94.7 127 42.5
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 9.6e-17 91.7 55 83.6
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 4.0e-15 86.3 63 66.7
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 6.9e-15 85.5 48 91.7
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 2.7e-11 73.6 153 37.3
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 3.0e-10 70.1 66 54.5
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-08 64.3 133 34.6
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 4.0e-07 59.7 96 40.6


User provided reference genes

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