Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0069571 Rosa chinensis HOM05D009709 ORTHO05D010307 3.9e-69 266.2 375 100.0
RcHm_v2.0_Chr5g0075791 Rosa chinensis HOM05D000162 ORTHO05D003288 4.7e-22 109.8 70 80.0
RcHm_v2.0_Chr5g0072871 Rosa chinensis HOM05D009709 ORTHO05D003288 4.4e-20 103.2 69 76.8
RcHm_v2.0_Chr5g0074961 Rosa chinensis HOM05D009709 ORTHO05D003288 4.4e-20 103.2 69 73.9
RcHm_v2.0_Chr5g0078611 Rosa chinensis HOM05D009709 ORTHO05D003288 9.8e-20 102.1 65 80.0
RcHm_v2.0_Chr5g0074181 Rosa chinensis HOM05D009709 ORTHO05D003288 2.9e-19 100.5 69 75.4
Prupe.6G195700 Prunus persica HOM05D009709 ORTHO05D003288 6.4e-19 99.4 74 64.9
FvH4_3g31580 Fragaria vesca HOM05D009709 ORTHO05D003288 3.2e-18 97.1 81 64.2
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.7e-17 94.0 82 61.0
FAN25G3795 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.0e-16 92.0 74 71.6
FAN21G0792 Fragaria x ananassa HOM05D000027 ORTHO05D001163 2.9e-16 90.5 65 67.7
FAN21G0960 Fragaria x ananassa HOM05D000027 ORTHO05D001163 2.9e-16 90.5 65 67.7
FAN21G2825 Fragaria x ananassa HOM05D000162 ORTHO05D003288 5.0e-16 89.7 65 69.2
FAN16G3455 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.8e-14 84.0 63 66.7
FAN16G2807 Fragaria x ananassa HOM05D009709 ORTHO05D003288 4.7e-14 83.2 80 62.5
FAN18G0982 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.4e-13 81.6 65 64.6
FAN25G2751 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.4e-13 81.6 65 64.6
FvH4_3g39650 Fragaria vesca HOM05D000162 ORTHO05D003288 1.2e-12 78.6 69 58.0
FAN11G2462 Fragaria x ananassa HOM05D009709 ORTHO05D003288 9.8e-12 75.5 121 43.0
FvH4_3g37111 Fragaria vesca HOM05D009709 ORTHO05D003288 1.7e-11 74.7 115 43.5
RcHm_v2.0_Chr5g0073761 Rosa chinensis HOM05D000162 ORTHO05D000090 2.9e-11 73.9 47 83.0
FAN11G1048 Fragaria x ananassa HOM05D010115 ORTHO05D010307 7.0e-10 69.3 54 63.0
FAN16G2854 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.2e-09 68.6 50 60.0
RcHm_v2.0_Chr5g0076251 Rosa chinensis HOM05D009519 ORTHO05D010307 3.5e-09 67.0 38 78.9
FAN25G3245 Fragaria x ananassa HOM05D009519 ORTHO05D010307 4.6e-09 66.6 39 76.9
Potri.005G046050 Populus trichocarpa HOM05D009709 ORTHO05D003288 7.8e-09 65.9 62 51.6
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.0e-08 65.5 69 49.3
FAN11G0997 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.0e-08 65.5 40 85.0
FAN25G0338 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.0e-08 65.5 40 85.0
RcHm_v2.0_Chr5g0027691 Rosa chinensis HOM05D009709 ORTHO05D003288 1.0e-08 65.5 47 72.3
EL10Ac4g09814 Beta vulgaris HOM05D000162 ORTHO05D000090 1.3e-08 65.1 66 47.0
BcaC04g20649 Brassica carinata HOM05D000162 ORTHO05D003288 1.3e-08 65.1 69 47.8
BolC9t56985H Brassica oleracea HOM05D000162 ORTHO05D003288 1.3e-08 65.1 69 47.8
C09p41050 Brassica napus HOM05D000162 ORTHO05D003288 2.3e-08 64.3 69 46.4
FvH4_3g38471 Fragaria vesca HOM05D009709 ORTHO05D003288 2.3e-08 64.3 52 67.3
Prupe.6G088600 Prunus persica HOM05D009519 ORTHO05D010307 3.0e-08 63.9 38 76.3
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 3.9e-08 63.5 69 44.9
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 5.0e-08 63.2 69 46.4
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 5.0e-08 63.2 69 46.4
Manes.09G016680 Manihot esculenta HOM05D000162 ORTHO05D003288 8.6e-08 62.4 75 45.3
QL03p013262 Quercus lobata HOM05D000162 ORTHO05D000090 8.6e-08 62.4 60 50.0
RcHm_v2.0_Chr5g0071931 Rosa chinensis HOM05D009519 ORTHO05D010307 8.6e-08 62.4 36 77.8
RcHm_v2.0_Chr7g0226421 Rosa chinensis HOM05D009519 ORTHO05D010307 8.6e-08 62.4 37 78.4
arahy.Tifrunner.gnm1.ann1.M2HM0V Arachis hypogaea HOM05D018308 ORTHO05D003288 1.1e-07 62.0 88 39.8
Dinv20260 Davidia involucrata HOM05D010002 ORTHO05D003288 1.1e-07 62.0 63 54.0
EL10Ac4g09525 Beta vulgaris HOM05D000162 ORTHO05D000090 1.5e-07 61.6 93 38.7
EL10Ac4g09526 Beta vulgaris HOM05D000162 ORTHO05D003288 1.5e-07 61.6 93 38.7
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 1.5e-07 61.6 69 46.4
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 1.5e-07 61.6 69 46.4
HanXRQChr03g0090811 Helianthus annuus HOM05D000162 ORTHO05D003288 1.5e-07 61.6 82 36.6
Prupe.6G091500 Prunus persica HOM05D009519 ORTHO05D010307 1.5e-07 61.6 39 74.4
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 2.5e-07 60.8 69 46.4
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 2.5e-07 60.8 69 46.4
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 2.5e-07 60.8 73 43.8
CSS0026088 Camellia sinensis var. sinensis HOM05D009709 ORTHO05D003288 3.3e-07 60.5 71 46.5
RcHm_v2.0_Chr5g0072771 Rosa chinensis HOM05D009519 ORTHO05D010307 3.3e-07 60.5 34 82.4
RcHm_v2.0_Chr5g0074191 Rosa chinensis HOM05D009519 ORTHO05D010307 3.3e-07 60.5 38 71.1
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 4.3e-07 60.1 69 46.4
TAR362G0788 Trochodendron aralioides HOM05D000162 ORTHO05D003288 5.6e-07 59.7 103 36.9
HanXRQChr07g0205001 Helianthus annuus HOM05D000162 ORTHO05D000090 7.3e-07 59.3 66 43.9
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 9.5e-07 58.9 86 40.7
AUR62000378 Chenopodium quinoa HOM05D000162 ORTHO05D003288 9.5e-07 58.9 59 52.5
AUR62006890 Chenopodium quinoa HOM05D000162 ORTHO05D003288 9.5e-07 58.9 60 53.3
AL2G12790 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 1.6e-06 58.2 76 42.1
BolC8t52230H Brassica oleracea HOM05D000162 ORTHO05D003288 1.6e-06 58.2 65 43.1
MD03G1101000 Malus domestica HOM05D000162 ORTHO05D003288 1.6e-06 58.2 85 41.2
arahy.Tifrunner.gnm1.ann1.KQ42YR Arachis hypogaea HOM05D018308 ORTHO05D003288 2.1e-06 57.8 82 43.9
FAN07G0501 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.1e-06 57.8 100 41.0
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 2.8e-06 57.4 67 41.8
HanXRQChr07g0203991 Helianthus annuus HOM05D000162 ORTHO05D000090 2.8e-06 57.4 63 44.4
AUR62000354 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.6e-06 57.0 75 44.0
FvH4_3g42700 Fragaria vesca HOM05D009519 ORTHO05D010307 3.6e-06 57.0 40 67.5
AUR62000666 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.7e-06 56.6 67 43.3
AUR62000649 Chenopodium quinoa HOM05D000162 ORTHO05D003288 6.2e-06 56.2 67 43.3
AUR62000650 Chenopodium quinoa HOM05D000162 ORTHO05D003288 6.2e-06 56.2 67 43.3
AUR62000665 Chenopodium quinoa HOM05D000162 ORTHO05D003288 6.2e-06 56.2 67 43.3
vmacro13801 Vaccinium macrocarpon HOM05D026694 ORTHO05D003288 6.2e-06 56.2 91 37.4
BcaC05g28279 Brassica carinata HOM05D000162 ORTHO05D003288 8.1e-06 55.8 72 38.9
C05p43270 Brassica napus HOM05D000162 ORTHO05D003288 8.1e-06 55.8 72 38.9
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 8.1e-06 55.8 67 41.8


User provided reference genes

Program Settings