Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.5e-225 785.8 386 100.0
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 2.9e-200 701.8 385 90.6
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.4e-199 699.5 385 90.4
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.4e-199 699.5 385 90.1
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.7e-198 695.3 385 89.6
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.6e-193 678.7 411 83.9
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 1.3e-176 623.2 382 79.3
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.1e-175 620.2 382 79.3
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 2.1e-174 615.9 382 79.3
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.0e-152 543.9 371 72.8
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 2.5e-151 539.3 357 73.9
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 3.3e-148 528.9 357 72.8
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 3.3e-148 528.9 384 69.3
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 3.7e-147 525.4 378 67.7
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 1.2e-145 520.4 383 68.4
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 7.7e-145 517.7 358 72.1
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.6e-142 510.0 384 65.9
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 2.6e-140 502.7 374 67.9
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 5.7e-140 501.5 378 66.4
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 7.5e-140 501.1 371 68.2
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 1.7e-139 500.0 350 70.0
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 6.3e-139 498.0 382 64.7
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.1e-138 497.3 369 65.0
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 7.0e-138 494.6 374 67.4
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 1.2e-137 493.8 371 67.1
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.2e-136 489.6 374 66.0
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 8.5e-136 487.6 389 64.8
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 4.4e-132 475.3 379 62.5
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 7.5e-132 474.6 369 64.8
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 7.5e-132 474.6 363 65.0
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.3e-131 473.8 369 64.2
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.8e-131 472.6 369 64.2
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 5.4e-130 468.4 339 67.0
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.6e-129 466.8 372 63.2
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 5.9e-129 464.9 369 63.4
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 7.7e-129 464.5 375 61.9
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 5.2e-125 451.8 373 62.7
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 8.9e-125 451.1 356 63.2
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 3.4e-124 449.1 376 60.6
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 5.7e-124 448.4 375 62.1
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.7e-123 446.8 371 61.5
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 3.1e-122 442.6 375 60.0
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 3.1e-122 442.6 382 59.7
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 4.1e-122 442.2 375 60.0
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 5.4e-122 441.8 376 59.8
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 9.2e-122 441.0 381 58.3
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 9.2e-122 441.0 372 60.2
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 1.0e-120 437.6 372 59.7
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.3e-120 437.2 373 58.7
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 1.7e-120 436.8 335 63.6
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 6.6e-120 434.9 330 66.1
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.2e-118 430.6 372 58.9
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 2.8e-118 429.5 344 61.0
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 2.8e-118 429.5 443 53.7
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 4.0e-117 425.6 318 67.9
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 6.8e-117 424.9 347 62.0
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 1.2e-116 424.1 380 57.9
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 5.7e-116 421.8 351 61.0
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 7.5e-116 421.4 319 66.8
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 8.3e-115 417.9 322 66.5
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 1.1e-114 417.5 332 64.8
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 1.1e-114 417.5 319 67.4
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 2.4e-114 416.4 325 64.9
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 3.2e-114 416.0 384 57.6
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 1.2e-113 414.1 322 62.7
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 1.6e-113 413.7 330 64.5
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 1.6e-113 413.7 344 62.2
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 2.0e-113 413.3 381 56.7
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 3.5e-113 412.5 324 66.0
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 3.5e-113 412.5 384 57.0
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 6.0e-113 411.8 356 58.7
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 1.3e-112 410.6 378 56.3
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 3.0e-112 409.5 347 60.5
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 8.6e-112 407.9 330 64.5
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 1.1e-111 407.5 385 59.2
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 4.3e-111 405.6 375 57.6
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 5.6e-111 405.2 280 69.6
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 7.3e-111 404.8 325 64.6
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 7.3e-111 404.8 375 57.1
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 7.3e-111 404.8 333 61.3
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 9.5e-111 404.4 373 57.1
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 1.2e-110 404.1 377 56.2
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 3.6e-110 402.5 280 69.3
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 3.6e-110 402.5 335 60.9
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 8.0e-110 401.4 325 64.3
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.3e-109 399.8 278 69.8
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.2e-108 397.5 374 55.3
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 5.8e-108 395.2 372 57.3
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 1.7e-107 393.7 392 53.1
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 4.9e-107 392.1 391 55.2
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 3.2e-106 389.4 373 54.7
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 3.2e-106 389.4 378 55.0
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 4.1e-106 389.0 327 60.9
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 7.0e-106 388.3 349 59.3
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 2.0e-105 386.7 325 63.1
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 2.0e-105 386.7 373 54.2
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 2.7e-105 386.3 276 69.9
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.7e-105 386.3 329 59.3
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 6.0e-105 385.2 383 54.3
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 1.3e-104 384.0 297 63.6
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 6.6e-104 381.7 284 65.5
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 4.0e-101 372.5 328 58.8
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 7.5e-100 368.2 331 57.4
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.9e-98 363.6 333 56.5
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.3e-96 356.7 296 58.4
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 5.1e-96 355.5 328 54.3
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 1.1e-93 347.8 288 61.8
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 4.0e-93 345.9 328 58.2
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 1.2e-92 344.4 319 55.8
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 2.6e-92 343.2 273 62.6
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 4.9e-83 312.4 345 48.1
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 3.0e-80 303.1 294 52.7
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 3.3e-79 299.7 290 52.4
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 1.1e-77 294.7 262 59.5
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 4.2e-74 282.7 189 74.1
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 1.5e-68 264.2 244 54.5
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.4e-66 257.7 300 45.0
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 1.5e-63 247.7 279 45.5
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 9.6e-63 245.0 292 47.9
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 2.1e-62 243.8 139 87.1
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 4.8e-62 242.7 290 44.1
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 8.2e-62 241.9 269 46.5
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 7.6e-60 235.3 309 44.3
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.0e-59 235.0 293 41.0
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 1.0e-59 235.0 139 84.2
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.9e-51 206.8 164 64.0
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 2.8e-46 190.3 174 59.2
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 3.1e-29 133.7 86 73.3
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 1.7e-27 127.9 86 77.9
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 8.2e-22 109.0 175 41.1
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 3.1e-21 107.1 58 91.4
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 2.0e-20 104.4 104 55.8
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 4.2e-18 96.7 78 70.5
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 2.3e-16 90.9 120 47.5
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 2.3e-16 90.9 120 47.5
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 4.0e-16 90.1 92 54.3
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 4.5e-12 76.6 71 54.9
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 7.7e-12 75.9 99 36.4
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 7.5e-07 59.3 47 63.8
BcaC02g11914 Brassica carinata HOM05D005476 ORTHO05D032808 2.8e-06 57.4 47 61.7


User provided reference genes

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