Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 4.8e-105 384.4 184 100.0
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 1.0e-94 350.1 184 89.7
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.1e-93 346.7 184 89.1
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.7e-92 341.3 184 88.0
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 6.8e-91 337.4 184 85.3
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 7.3e-85 317.4 183 80.9
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 5.4e-80 301.2 184 76.1
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 4.6e-79 298.1 184 76.6
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 3.0e-78 295.4 184 73.9
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 1.1e-77 293.5 183 73.2
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.9e-77 292.7 155 88.4
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 5.6e-77 291.2 183 72.7
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 9.5e-77 290.4 183 72.7
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 2.1e-76 289.3 184 72.8
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.6e-76 288.5 151 90.1
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 8.1e-76 287.3 183 71.0
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 1.1e-75 287.0 181 72.4
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 1.8e-75 286.2 177 74.0
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.8e-75 286.2 183 69.9
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 3.1e-75 285.4 176 73.9
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 4.0e-75 285.0 182 71.4
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 1.2e-74 283.5 182 70.9
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 1.2e-74 283.5 182 69.2
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 3.4e-74 282.0 186 69.9
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 3.4e-74 282.0 178 70.8
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 5.8e-74 281.2 178 72.5
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 5.8e-74 281.2 178 70.8
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 1.3e-73 280.0 186 71.0
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 2.2e-73 279.3 185 71.4
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 2.2e-73 279.3 186 69.9
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 4.9e-73 278.1 183 71.0
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 6.4e-73 277.7 183 68.9
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 1.9e-72 276.2 177 68.9
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 1.9e-72 276.2 178 69.7
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 1.9e-72 276.2 181 70.2
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 4.1e-72 275.0 181 69.1
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 5.4e-72 274.6 179 71.5
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 5.4e-72 274.6 185 70.3
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 1.2e-71 273.5 181 69.6
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 2.1e-71 272.7 177 68.4
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 2.7e-71 272.3 181 67.4
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.6e-71 271.6 177 68.4
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.6e-71 271.6 177 68.4
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 4.6e-71 271.6 181 68.5
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.0e-70 270.4 178 70.8
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 1.0e-70 270.4 178 70.2
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 1.3e-70 270.0 178 68.5
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 1.7e-70 269.6 184 66.3
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.3e-70 269.2 181 69.1
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 2.3e-70 269.2 176 67.0
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 3.9e-70 268.5 181 66.9
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 3.9e-70 268.5 181 67.4
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 1.9e-69 266.2 178 67.4
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 2.5e-69 265.8 173 67.6
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 4.3e-69 265.0 181 69.6
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 4.3e-69 265.0 176 67.6
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 5.6e-69 264.6 181 66.9
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 7.3e-69 264.2 171 70.2
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 7.3e-69 264.2 183 63.9
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 2.1e-68 262.7 179 65.4
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 4.7e-68 261.5 174 67.8
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 8.1e-68 260.8 179 68.2
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 8.1e-68 260.8 181 65.7
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 1.1e-67 260.4 174 69.5
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 2.4e-67 259.2 180 63.9
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 4.0e-67 258.5 182 62.6
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 5.2e-67 258.1 177 67.8
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 6.8e-67 257.7 175 68.6
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 8.9e-67 257.3 173 68.8
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 8.9e-67 257.3 174 68.4
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 8.9e-67 257.3 176 67.0
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 3.4e-66 255.4 177 67.2
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 4.4e-66 255.0 182 64.3
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 5.8e-66 254.6 185 64.3
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 5.8e-66 254.6 185 64.9
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 7.6e-66 254.2 170 68.8
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 7.6e-66 254.2 176 65.9
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 7.6e-66 254.2 175 65.1
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.7e-65 253.1 174 67.2
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 4.9e-65 251.5 175 66.3
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 1.6e-63 246.5 177 66.1
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 2.1e-63 246.1 164 67.7
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 3.5e-63 245.4 183 62.8
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 2.3e-62 242.7 177 59.3
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 3.0e-62 242.3 155 68.4
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 6.6e-62 241.1 173 65.3
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 4.3e-61 238.4 163 67.5
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 4.3e-61 238.4 163 67.5
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 9.6e-61 237.3 175 57.7
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 2.1e-60 236.1 175 61.7
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 2.1e-60 236.1 181 59.7
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 2.1e-60 236.1 181 59.7
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 2.8e-60 235.7 171 63.7
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 2.4e-59 232.6 171 63.2
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 2.4e-59 232.6 156 65.4
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 2.0e-58 229.6 174 60.3
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 9.9e-58 227.3 164 64.0
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 9.9e-58 227.3 181 59.1
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 4.9e-57 224.9 160 65.0
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.1e-56 223.8 172 62.2
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 3.2e-56 222.2 149 66.4
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 3.5e-55 218.8 152 67.1
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 3.1e-51 205.7 154 60.4
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 2.0e-50 203.0 165 55.8
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 7.9e-47 191.0 181 48.1
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 6.7e-46 188.0 182 47.8
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 5.6e-45 184.9 130 62.3
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 5.3e-43 178.3 186 45.7
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.2e-42 177.2 182 45.6
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.7e-41 173.3 128 61.7
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 2.2e-41 172.9 119 65.5
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 6.9e-35 151.4 178 43.8
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 7.9e-31 137.9 127 55.1
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 3.6e-23 112.5 76 73.7
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 4.3e-21 105.5 173 37.0
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 1.1e-19 100.9 151 37.7
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 6.5e-17 91.7 180 36.7
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 1.5e-13 80.5 95 45.3
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.3e-12 77.4 59 54.2
BolC4t23645H Brassica oleracea HOM05D000003 ORTHO05D001498 1.4e-06 57.4 71 45.1
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 3.0e-06 56.2 194 27.8


User provided reference genes

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