Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 3.8e-84 314.7 150 100.0
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 6.2e-58 227.6 153 74.5
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 2.4e-57 225.7 153 73.9
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 3.1e-57 225.3 153 73.9
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 4.0e-57 224.9 153 73.9
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 1.5e-51 206.5 149 68.5
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 1.5e-51 206.5 152 67.1
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 3.3e-51 205.3 153 65.4
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 3.3e-51 205.3 152 66.4
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 5.6e-51 204.5 152 66.4
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.6e-50 203.0 153 65.4
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.8e-50 202.2 153 65.4
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 4.7e-50 201.4 153 65.4
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 2.2e-47 192.6 149 64.4
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 4.9e-47 191.4 146 63.7
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 6.4e-47 191.0 153 62.7
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 6.4e-47 191.0 151 60.9
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 6.4e-47 191.0 147 63.3
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 6.4e-47 191.0 153 58.8
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 8.4e-47 190.7 153 62.1
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.4e-46 189.9 174 54.0
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.4e-46 189.9 176 53.4
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 1.9e-46 189.5 149 61.7
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.9e-46 189.5 151 60.3
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 5.4e-46 188.0 153 58.2
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 5.4e-46 188.0 153 58.2
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.2e-45 186.8 153 60.8
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 3.5e-45 185.3 153 58.2
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.6e-45 184.9 154 58.4
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 6.0e-45 184.5 148 61.5
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.0e-44 183.7 153 58.8
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.0e-44 183.7 153 57.5
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 3.0e-44 182.2 153 61.4
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 3.9e-44 181.8 141 63.8
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.6e-42 176.4 144 61.1
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.6e-42 176.4 144 61.1
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.8e-42 175.6 141 59.6
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 3.6e-42 175.3 141 61.0
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 3.6e-42 175.3 144 59.0
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.1e-41 173.7 148 58.1
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.4e-41 173.3 148 57.4
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 5.3e-41 171.4 143 58.7
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 6.9e-41 171.0 143 58.7
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 6.9e-41 171.0 143 58.7
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 9.0e-41 170.6 137 59.1
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.2e-40 170.2 143 58.7
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.2e-40 170.2 142 59.2
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.0e-40 169.5 144 57.6
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 7.6e-40 167.5 142 55.6
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 7.6e-40 167.5 154 55.8
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 9.9e-40 167.2 143 57.3
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 2.2e-39 166.0 97 79.4
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.4e-38 163.3 120 65.0
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 1.4e-38 163.3 135 58.5
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.4e-38 162.5 149 54.4
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 3.2e-38 162.2 97 77.3
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 4.2e-38 161.8 152 53.3
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 9.3e-38 160.6 144 55.6
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 9.3e-38 160.6 97 77.3
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 9.3e-38 160.6 97 77.3
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.2e-37 160.2 97 77.3
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 1.6e-37 159.8 91 82.4
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.5e-37 158.7 139 56.8
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 4.6e-37 158.3 97 76.3
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 6.0e-37 157.9 153 51.6
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 6.0e-37 157.9 147 53.1
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 7.9e-37 157.5 97 73.2
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 7.9e-37 157.5 97 73.2
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 7.9e-37 157.5 97 74.2
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 7.9e-37 157.5 97 74.2
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 1.8e-36 156.4 97 73.2
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 1.8e-36 156.4 96 74.0
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 3.0e-36 155.6 152 54.6
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 3.9e-36 155.2 97 74.2
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 1.5e-35 153.3 97 70.1
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.5e-35 153.3 97 71.1
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.5e-35 153.3 97 71.1
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 2.5e-35 152.5 107 67.3
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 2.5e-35 152.5 97 70.1
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 3.3e-35 152.1 97 71.1
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 3.3e-35 152.1 97 70.1
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 3.3e-35 152.1 92 75.0
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 3.3e-35 152.1 92 75.0
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 4.3e-35 151.8 97 71.1
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 5.6e-35 151.4 97 72.2
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 7.4e-35 151.0 97 71.1
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 9.6e-35 150.6 97 69.1
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 9.6e-35 150.6 102 68.6
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 9.6e-35 150.6 97 72.2
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 2.1e-34 149.4 97 67.0
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 2.8e-34 149.1 146 47.9
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 2.8e-34 149.1 97 69.1
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 3.7e-34 148.7 97 69.1
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 8.1e-34 147.5 87 78.2
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 3.1e-33 145.6 97 70.1
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 4.0e-33 145.2 97 69.1
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 9.0e-33 144.1 97 67.0
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.2e-32 143.7 88 75.0
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 1.5e-32 143.3 97 68.0
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 2.0e-32 142.9 97 70.1
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 2.6e-32 142.5 83 78.3
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 3.4e-32 142.1 90 71.1
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 3.4e-32 142.1 92 70.7
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 4.5e-32 141.7 97 64.9
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 4.5e-32 141.7 92 70.7
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 5.8e-32 141.4 88 73.9
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 9.9e-32 140.6 85 75.3
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.9e-31 139.0 83 75.9
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 2.9e-31 139.0 122 50.8
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.1e-30 137.1 88 71.6
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 2.4e-30 136.0 88 68.2
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 3.2e-30 135.6 88 70.5
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 3.2e-30 135.6 88 69.3
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 3.2e-30 135.6 90 70.0
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 4.2e-30 135.2 153 43.8
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 4.2e-30 135.2 153 44.4
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 9.3e-30 134.0 119 53.8
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.2e-29 133.7 130 50.8
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.6e-29 133.3 152 46.7
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.6e-29 133.3 88 68.2
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 1.3e-28 130.2 153 48.4
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 4.3e-27 125.2 132 51.5
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.8e-26 122.5 156 46.8
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 4.8e-26 121.7 156 46.8
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.1e-25 120.6 68 77.9
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 6.9e-25 117.9 121 45.5
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.2e-24 117.1 145 44.1
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 2.0e-24 116.3 151 42.4
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 5.8e-24 114.8 103 54.4
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 6.5e-23 111.3 152 40.8
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 8.4e-23 110.9 142 41.5
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.0e-20 104.0 146 39.7
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 8.7e-20 100.9 53 84.9
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 8.7e-20 100.9 154 36.4
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.0e-15 87.4 90 48.9
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 6.7e-12 74.7 63 57.1
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 2.2e-07 59.7 130 30.0
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.9e-07 59.3 67 52.2


User provided reference genes

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