Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0067831 Rosa chinensis HOM05D000292 ORTHO05D021045 3.8e-48 194.5 97 100.0
RcHm_v2.0_Chr6g0278351 Rosa chinensis HOM05D000292 ORTHO05D000172 8.1e-35 150.2 97 82.5
RcHm_v2.0_Chr5g0067751 Rosa chinensis HOM05D000292 ORTHO05D000172 1.2e-33 146.4 102 76.5
FAN21G4040 Fragaria x ananassa HOM05D000292 ORTHO05D000172 2.2e-16 89.0 98 49.0
FvH4_3g37601 Fragaria vesca HOM05D000292 ORTHO05D000172 8.4e-16 87.0 96 51.0
FvH4_3g37610 Fragaria vesca HOM05D000292 ORTHO05D000172 8.4e-16 87.0 98 48.0
MD11G1083400 Malus domestica HOM05D000292 ORTHO05D000172 1.9e-15 85.9 81 56.8
FvH4_3g37640 Fragaria vesca HOM05D000292 ORTHO05D000172 5.5e-15 84.3 77 54.5
FAN11G2128 Fragaria x ananassa HOM05D000292 ORTHO05D000172 5.5e-15 84.3 77 54.5
Prupe.6G064100 Prunus persica HOM05D000292 ORTHO05D000172 7.1e-15 84.0 89 51.7
MD03G1079300 Malus domestica HOM05D000292 ORTHO05D000172 1.6e-14 82.8 100 49.0
MD03G1079500 Malus domestica HOM05D000292 ORTHO05D000172 1.6e-14 82.8 104 47.1
MD03G1079600 Malus domestica HOM05D000292 ORTHO05D000172 3.5e-14 81.6 82 53.7
FAN11G2207 Fragaria x ananassa HOM05D000292 ORTHO05D000172 4.6e-14 81.3 81 53.1
FAN11G3875 Fragaria x ananassa HOM05D000292 ORTHO05D000172 1.0e-13 80.1 105 45.7
Prupe.6G064000 Prunus persica HOM05D000292 ORTHO05D000172 1.3e-13 79.7 75 57.3
MD03G1079700 Malus domestica HOM05D000292 ORTHO05D000172 2.3e-13 79.0 77 50.6
FvH4_3g37590 Fragaria vesca HOM05D000292 ORTHO05D000172 5.1e-13 77.8 85 47.1
Prupe.6G064300 Prunus persica HOM05D000292 ORTHO05D000172 5.1e-13 77.8 90 51.1
RcHm_v2.0_Chr5g0067471 Rosa chinensis HOM05D000292 ORTHO05D000172 5.1e-13 77.8 85 48.2
RcHm_v2.0_Chr5g0067861 Rosa chinensis HOM05D000292 ORTHO05D000172 5.1e-13 77.8 75 53.3
FAN21G3664 Fragaria x ananassa HOM05D000292 ORTHO05D000172 6.7e-13 77.4 77 55.8
Thecc.09G308900 Theobroma cacao HOM05D000292 ORTHO05D000172 8.7e-13 77.0 83 51.8
Prupe.6G063700 Prunus persica HOM05D000292 ORTHO05D000172 1.5e-12 76.3 98 44.9
Prupe.6G063900 Prunus persica HOM05D000292 ORTHO05D000172 1.5e-12 76.3 99 43.4
RcHm_v2.0_Chr5g0067521 Rosa chinensis HOM05D000292 ORTHO05D000172 1.5e-12 76.3 85 47.1
RcHm_v2.0_Chr5g0067571 Rosa chinensis HOM05D000292 ORTHO05D000172 1.9e-12 75.9 103 40.8
RcHm_v2.0_Chr3g0490491 Rosa chinensis HOM05D000292 ORTHO05D000172 3.3e-12 75.1 99 41.4
RcHm_v2.0_Chr5g0067801 Rosa chinensis HOM05D000292 ORTHO05D000172 3.3e-12 75.1 75 53.3
Dinv17078 Davidia involucrata HOM05D000292 ORTHO05D000172 4.3e-12 74.7 77 48.1
Dinv43022 Davidia involucrata HOM05D000292 ORTHO05D000172 4.3e-12 74.7 77 48.1
Dinv43076 Davidia involucrata HOM05D000292 ORTHO05D000172 4.3e-12 74.7 77 48.1
MD11G1083300 Malus domestica HOM05D000292 ORTHO05D000172 4.3e-12 74.7 73 50.7
FvH4_6g48430 Fragaria vesca HOM05D000292 ORTHO05D000172 5.7e-12 74.3 84 50.0
MD11G1083700 Malus domestica HOM05D000292 ORTHO05D000172 5.7e-12 74.3 78 48.7
MD11G1083600 Malus domestica HOM05D000292 ORTHO05D000172 9.7e-12 73.6 93 41.9
RcHm_v2.0_Chr5g0055481 Rosa chinensis HOM05D000292 ORTHO05D000172 9.7e-12 73.6 75 52.0
Dinv14485 Davidia involucrata HOM05D000292 ORTHO05D000172 1.3e-11 73.2 99 42.4
FAN14G5187 Fragaria x ananassa HOM05D000292 ORTHO05D000172 1.6e-11 72.8 75 49.3
MD03G1079800 Malus domestica HOM05D000292 ORTHO05D000172 2.2e-11 72.4 86 51.2
MD11G1083900 Malus domestica HOM05D000292 ORTHO05D000172 2.2e-11 72.4 75 49.3
MD11G1084000 Malus domestica HOM05D000292 ORTHO05D000172 2.2e-11 72.4 82 43.9
RcHm_v2.0_Chr5g0067841 Rosa chinensis HOM05D000292 ORTHO05D000172 2.2e-11 72.4 84 50.0
RcHm_v2.0_Chr5g0068351 Rosa chinensis HOM05D000292 ORTHO05D000172 3.7e-11 71.6 75 50.7
Duzib170G0100 Durio zibethinus HOM05D000292 ORTHO05D000172 4.8e-11 71.2 82 46.3
RcHm_v2.0_Chr5g0067691 Rosa chinensis HOM05D000292 ORTHO05D000172 4.8e-11 71.2 84 48.8
COL.COLO4_19075 Corchorus olitorius HOM05D000292 ORTHO05D000172 1.4e-10 69.7 91 45.1
COL.COLO4_19074 Corchorus olitorius HOM05D000292 ORTHO05D000172 3.1e-10 68.6 92 43.5
RcHm_v2.0_Chr5g0067671 Rosa chinensis HOM05D000292 ORTHO05D000172 3.1e-10 68.6 51 58.8
MD11G1084300 Malus domestica HOM05D000292 ORTHO05D000172 4.1e-10 68.2 78 51.3
Duzib168G0276 Durio zibethinus HOM05D000292 ORTHO05D000172 5.3e-10 67.8 83 43.4
Thecc.09G308800 Theobroma cacao HOM05D000292 ORTHO05D000172 2.6e-09 65.5 82 41.5
COL.COLO4_19076 Corchorus olitorius HOM05D000292 ORTHO05D000172 4.5e-09 64.7 92 43.5
Gorai.003G125600 Gossypium raimondii HOM05D000292 ORTHO05D000172 5.9e-09 64.3 76 42.1
MD03G1079100 Malus domestica HOM05D000292 ORTHO05D021045 5.9e-09 64.3 83 47.0
CSS0014923 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 7.6e-09 63.9 80 41.2
Gohir.A03G047800 Gossypium hirsutum HOM05D000292 ORTHO05D000172 1.0e-08 63.5 76 40.8
MD03G1079400 Malus domestica HOM05D000292 ORTHO05D000172 1.3e-08 63.2 82 46.3
FvH4_3g37580 Fragaria vesca HOM05D000292 ORTHO05D000172 2.2e-08 62.4 50 58.0
Manes.01G165900 Manihot esculenta HOM05D000292 ORTHO05D000172 2.9e-08 62.0 89 41.6
Prupe.6G064400 Prunus persica HOM05D000292 ORTHO05D021045 2.9e-08 62.0 64 53.1
Cc02_g23130 Coffea canephora HOM05D000292 ORTHO05D000172 6.5e-08 60.8 78 37.2
CSS0007252 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 8.5e-08 60.5 80 38.8
CSS0027918 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 8.5e-08 60.5 80 38.8
CSS0021970 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 1.1e-07 60.1 77 40.3
COL.COLO4_19078 Corchorus olitorius HOM05D000292 ORTHO05D000172 1.4e-07 59.7 76 44.7
Dinv19406 Davidia involucrata HOM05D000292 ORTHO05D000172 1.9e-07 59.3 77 40.3
RcHm_v2.0_Chr5g0067441 Rosa chinensis HOM05D000292 ORTHO05D000172 2.5e-07 58.9 50 58.0
RcHm_v2.0_Chr5g0067511 Rosa chinensis HOM05D000292 ORTHO05D000172 3.2e-07 58.5 50 58.0
CSS0004000 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 4.2e-07 58.2 77 39.0
Dinv28592 Davidia involucrata HOM05D000292 ORTHO05D000172 4.2e-07 58.2 83 37.3
Potri.001G247300 Populus trichocarpa HOM05D000292 ORTHO05D000172 5.5e-07 57.8 100 35.0
Sabra16G0150200 Salix brachista HOM05D000292 ORTHO05D000172 5.5e-07 57.8 78 42.3
Thecc.09G308600 Theobroma cacao HOM05D000292 ORTHO05D000172 7.2e-07 57.4 77 40.3
TAR636G1917 Trochodendron aralioides HOM05D000292 ORTHO05D000172 1.2e-06 56.6 86 36.0
TAR636G3432 Trochodendron aralioides HOM05D000292 ORTHO05D000172 1.2e-06 56.6 86 36.0
Gohir.D03G119300 Gossypium hirsutum HOM05D000292 ORTHO05D000172 2.1e-06 55.8 50 50.0
Lj5A265G36 Lonicera japonica HOM05D000292 ORTHO05D000172 2.1e-06 55.8 80 36.2
RcHm_v2.0_Chr5g0067491 Rosa chinensis HOM05D000292 ORTHO05D000172 2.1e-06 55.8 46 56.5
TAR636G0285 Trochodendron aralioides HOM05D000292 ORTHO05D000172 2.1e-06 55.8 83 36.1
Atru.chr1.3955 Acer truncatum HOM05D000292 ORTHO05D021045 2.7e-06 55.5 55 49.1
Atru.chr1.3956 Acer truncatum HOM05D000292 ORTHO05D021045 2.7e-06 55.5 55 49.1
Atru.chr1.3988 Acer truncatum HOM05D000292 ORTHO05D021045 2.7e-06 55.5 55 49.1
Potri.001G247200 Populus trichocarpa HOM05D000292 ORTHO05D000172 2.7e-06 55.5 76 39.5
TAR636G2411 Trochodendron aralioides HOM05D000292 ORTHO05D000172 2.7e-06 55.5 89 37.1
TAR636G2896 Trochodendron aralioides HOM05D000292 ORTHO05D000172 2.7e-06 55.5 89 34.8
VMungo1383G1253 Vigna mungo HOM05D000292 ORTHO05D000172 2.7e-06 55.5 68 38.2
Actinidia39005 Actinidia chinensis HOM05D000292 ORTHO05D000172 3.6e-06 55.1 106 30.2
TAR636G2800 Trochodendron aralioides HOM05D000292 ORTHO05D000172 4.6e-06 54.7 83 34.9
Dinv19411 Davidia involucrata HOM05D000292 ORTHO05D000172 6.1e-06 54.3 93 35.5
Glyma.07G137500 Glycine max HOM05D000292 ORTHO05D000172 6.1e-06 54.3 86 34.9
Sopen06g001880 Solanum pennellii HOM05D000292 ORTHO05D000172 6.1e-06 54.3 80 36.2
PGSC0003DMG400020842 Solanum tuberosum HOM05D000292 ORTHO05D000172 6.1e-06 54.3 80 36.2
TAR636G2636 Trochodendron aralioides HOM05D000292 ORTHO05D000172 6.1e-06 54.3 86 34.9
DCAR_001760 Daucus carota HOM05D000292 ORTHO05D000172 7.9e-06 53.9 84 36.9
MBI07_g46901_MAGBIO Magnolia biondii HOM05D000292 ORTHO05D000172 7.9e-06 53.9 74 33.8


User provided reference genes

Program Settings