Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0067561 Rosa chinensis HOM05D006849 ORTHO05D003348 3.3e-68 261.5 130 100.0
RcHm_v2.0_Chr7g0230621 Rosa chinensis HOM05D006849 ORTHO05D003348 6.3e-67 257.3 130 98.5
RcHm_v2.0_Chr2g0149141 Rosa chinensis HOM05D006849 ORTHO05D003348 2.4e-58 228.8 117 94.9
RcHm_v2.0_Chr5g0010461 Rosa chinensis HOM05D006849 ORTHO05D003348 3.1e-58 228.4 117 94.9
RcHm_v2.0_Chr4g0413141 Rosa chinensis HOM05D006849 ORTHO05D003348 1.7e-43 179.5 95 94.7
RcHm_v2.0_Chr3g0491361 Rosa chinensis HOM05D006849 ORTHO05D003348 6.4e-27 124.4 117 47.0
RcHm_v2.0_Chr5g0066571 Rosa chinensis HOM05D006849 ORTHO05D003348 3.0e-24 115.5 116 44.0
RcHm_v2.0_Chr2g0141711 Rosa chinensis HOM05D006849 ORTHO05D003348 3.3e-23 112.1 118 44.9
RcHm_v2.0_Chr1g0371171 Rosa chinensis HOM05D006849 ORTHO05D003348 2.4e-21 105.9 117 42.7
FvH4_2g06412 Fragaria vesca HOM05D006849 ORTHO05D003348 4.0e-21 105.1 116 41.4
FAN14G2538 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.0e-21 105.1 116 41.4
FAN21G2011 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.9e-21 104.0 116 40.5
FAN02G2385 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.4e-18 95.9 116 40.5
RcHm_v2.0_Chr2g0150581 Rosa chinensis HOM05D007856 ORTHO05D003348 2.4e-18 95.9 116 41.4
FAN06G0436 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.4e-18 94.7 116 40.5
FvH4_5g21501 Fragaria vesca HOM05D006849 ORTHO05D003348 4.6e-17 91.7 118 38.1
RcHm_v2.0_Chr2g0174211 Rosa chinensis HOM05D006849 ORTHO05D003348 1.3e-16 90.1 155 34.2
FAN07G1000 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.5e-15 85.9 109 41.3
FAN27G1530 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.1e-14 80.9 88 42.0
RcHm_v2.0_Chr7g0230521 Rosa chinensis HOM05D006849 ORTHO05D003348 8.1e-14 80.9 65 52.3
FvH4_6g08820 Fragaria vesca HOM05D007856 ORTHO05D003348 1.1e-13 80.5 119 37.0
FAN26G2587 Fragaria x ananassa HOM05D007856 ORTHO05D003348 3.1e-13 79.0 119 37.0
FAN19G3137 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.3e-13 78.2 116 34.5
RcHm_v2.0_Chr7g0206181 Rosa chinensis HOM05D006849 ORTHO05D003348 4.4e-12 75.1 64 50.0
FvH4_5g19920 Fragaria vesca HOM05D006849 ORTHO05D003348 7.6e-12 74.3 107 38.3
FAN23G2888 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.3e-11 73.6 107 38.3
FAN15G3621 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.9e-11 72.4 106 38.7
FAN16G1806 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.8e-11 72.0 107 37.4
RcHm_v2.0_Chr5g0050871 Rosa chinensis HOM05D006849 ORTHO05D003348 1.1e-10 70.5 84 38.1
MD07G1084700 Malus domestica HOM05D006849 ORTHO05D003348 3.2e-10 68.9 111 33.3
MD08G1229500 Malus domestica HOM05D006849 ORTHO05D003348 7.1e-10 67.8 90 40.0
FAN01G0657 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.1e-09 66.2 117 32.5
FAN01G3000 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.1e-09 66.2 117 32.5
FvH4_3g02850 Fragaria vesca HOM05D000096 ORTHO05D000045 2.7e-09 65.9 117 31.6
FvH4_2g22171 Fragaria vesca HOM05D006849 ORTHO05D003348 3.5e-09 65.5 94 41.5
FAN21G0813 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.0e-08 63.9 65 47.7
RcHm_v2.0_Chr5g0053321 Rosa chinensis HOM05D006849 ORTHO05D003348 1.3e-08 63.5 68 41.2
FvH4_2g08146 Fragaria vesca HOM05D007856 ORTHO05D003348 1.7e-08 63.2 119 32.8
Potri.019G061550 Populus trichocarpa HOM05D006849 ORTHO05D003348 2.3e-08 62.8 114 29.8
FAN08G0186 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.0e-08 62.4 60 48.3
MD14G1125700 Malus domestica HOM05D006849 ORTHO05D003348 3.0e-08 62.4 99 35.4
FAN06G4964 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.1e-08 61.6 66 45.5
FAN17G1070 Fragaria x ananassa HOM05D007856 ORTHO05D003348 8.7e-08 60.8 119 31.1
FAN05G3326 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.1e-07 60.5 87 36.8
RcHm_v2.0_Chr7g0212031 Rosa chinensis HOM05D006849 ORTHO05D003348 1.1e-07 60.5 77 37.7
FvH4_5g31990 Fragaria vesca HOM05D006849 ORTHO05D003348 1.5e-07 60.1 66 43.9
FAN24G0953 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.5e-07 60.1 119 30.3
FAN28G1495 Fragaria x ananassa HOM05D007856 ORTHO05D003348 3.3e-07 58.9 87 35.6
Hma1.2p1_0045F.1_g026410 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 4.3e-07 58.5 121 31.4
Potri.001G165480 Populus trichocarpa HOM05D018388 ORTHO05D003348 4.3e-07 58.5 108 29.6
FAN20G3125 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.1e-06 56.2 90 33.3
FvH4_5g26612 Fragaria vesca HOM05D007856 ORTHO05D003348 3.6e-06 55.5 89 30.3
RcHm_v2.0_Chr5g0035621 Rosa chinensis HOM05D006849 ORTHO05D003348 4.8e-06 55.1 61 41.0
QL93p0160_0004 Quercus lobata HOM05D002907 ORTHO05D000065 8.1e-06 54.3 119 31.1
RcHm_v2.0_Chr6g0262741 Rosa chinensis HOM05D006849 ORTHO05D003348 8.1e-06 54.3 61 41.0


User provided reference genes

Program Settings