Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-33 144.8 79 100.0
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-33 144.8 79 100.0
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-32 142.9 78 98.7
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-32 142.9 78 98.7
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-32 142.9 78 98.7
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-32 142.1 79 97.5
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-32 141.0 78 97.4
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-31 139.4 78 96.2
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-31 139.0 78 96.2
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.6e-31 138.3 78 94.9
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-31 138.3 78 96.2
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 4.4e-31 137.5 78 94.9
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.6e-31 136.7 78 93.6
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-30 136.0 78 92.3
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-30 135.2 78 94.9
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.9e-30 134.8 78 91.0
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 3.8e-30 134.4 78 92.3
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.8e-30 134.4 78 91.0
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.4e-30 133.7 78 91.0
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.1e-29 131.0 78 89.7
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.6e-28 129.0 78 87.2
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 3.5e-28 127.9 72 95.8
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 7.8e-28 126.7 78 85.9
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 2.3e-27 125.2 78 84.6
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.1e-27 124.0 70 94.3
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 8.7e-27 123.2 77 83.1
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 1.1e-26 122.9 74 86.5
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 1.9e-26 122.1 72 87.5
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.9e-26 122.1 78 84.6
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 4.3e-26 120.9 78 82.1
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 5.6e-26 120.6 71 88.7
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 7.3e-26 120.2 75 82.7
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 9.6e-26 119.8 71 88.7
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 9.6e-26 119.8 71 87.3
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.2e-25 119.4 77 80.5
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 1.2e-25 119.4 70 88.6
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 1.2e-25 119.4 70 88.6
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.6e-25 119.0 71 90.1
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.6e-25 119.0 72 84.7
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.6e-25 119.0 71 84.5
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 2.1e-25 118.6 72 83.3
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 3.6e-25 117.9 71 87.3
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 3.6e-25 117.9 71 85.9
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 3.6e-25 117.9 72 83.3
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 3.6e-25 117.9 80 80.0
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 3.6e-25 117.9 71 87.3
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 3.6e-25 117.9 71 87.3
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 3.6e-25 117.9 71 87.3
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 3.6e-25 117.9 71 87.3
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 3.6e-25 117.9 71 87.3
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 4.7e-25 117.5 71 88.7
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 4.7e-25 117.5 78 80.8
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.7e-25 117.5 72 84.7
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 6.2e-25 117.1 77 79.2
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.2e-25 117.1 78 83.3
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 6.2e-25 117.1 76 80.3
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.1e-25 116.7 75 80.0
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 8.1e-25 116.7 75 80.0
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 8.1e-25 116.7 75 80.0
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 8.1e-25 116.7 71 84.5
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.1e-24 116.3 71 87.3
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 1.1e-24 116.3 75 80.0
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.1e-24 116.3 71 85.9
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.1e-24 116.3 71 85.9
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 1.4e-24 115.9 71 87.3
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 1.4e-24 115.9 74 82.4
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 1.4e-24 115.9 72 80.6
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 1.4e-24 115.9 72 80.6
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.4e-24 115.9 71 87.3
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.8e-24 115.5 75 78.7
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.8e-24 115.5 72 83.3
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.8e-24 115.5 72 83.3
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.8e-24 115.5 78 82.1
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 1.8e-24 115.5 77 79.2
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.8e-24 115.5 71 84.5
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 2.4e-24 115.2 70 88.6
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.4e-24 115.2 71 84.5
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.4e-24 115.2 71 84.5
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 2.4e-24 115.2 72 83.3
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 3.1e-24 114.8 79 83.5
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 3.1e-24 114.8 78 79.5
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 3.1e-24 114.8 75 78.7
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 3.1e-24 114.8 75 78.7
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 3.1e-24 114.8 75 78.7
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 3.1e-24 114.8 75 78.7
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 3.1e-24 114.8 75 78.7
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 3.1e-24 114.8 75 78.7
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 3.1e-24 114.8 75 78.7
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 3.1e-24 114.8 75 78.7
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 3.1e-24 114.8 75 78.7
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 3.1e-24 114.8 75 78.7
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.1e-24 114.8 78 80.8
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.1e-24 114.8 71 84.5
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 4.0e-24 114.4 71 83.1
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 4.0e-24 114.4 71 83.1
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 5.2e-24 114.0 71 83.1
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 5.2e-24 114.0 71 83.1
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 5.2e-24 114.0 76 78.9
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 6.9e-24 113.6 70 81.4
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 6.9e-24 113.6 70 84.3
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 9.0e-24 113.2 71 84.5
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 9.0e-24 113.2 71 83.1
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 1.2e-23 112.8 75 80.0
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.2e-23 112.8 71 83.1
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.5e-23 112.5 78 74.4
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.5e-23 112.5 78 74.4
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-23 112.5 78 80.8
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.5e-23 112.5 71 81.7
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 2.0e-23 112.1 71 81.7
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 2.6e-23 111.7 70 81.4
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.6e-23 111.7 71 80.3
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 3.4e-23 111.3 75 77.3
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.4e-23 111.3 71 83.1
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 4.4e-23 110.9 70 82.9
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 4.4e-23 110.9 78 78.2
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 7.6e-23 110.2 78 73.1
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 7.6e-23 110.2 77 74.0
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.7e-22 109.0 70 81.4
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.7e-22 109.0 70 81.4
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.7e-22 109.0 70 81.4
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 2.2e-22 108.6 75 76.0
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 2.2e-22 108.6 67 83.6
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 2.9e-22 108.2 70 81.4
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 4.9e-22 107.5 70 80.0
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 8.4e-22 106.7 70 80.0
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 1.1e-21 106.3 70 80.0
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 2.4e-21 105.1 79 73.4
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 2.4e-21 105.1 77 74.0
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 2.4e-21 105.1 70 77.1
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 4.2e-21 104.4 70 78.6
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 4.2e-21 104.4 70 77.1
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 5.4e-21 104.0 79 75.9
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 9.3e-21 103.2 70 78.6
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 2.7e-20 101.7 70 77.1
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.5e-20 101.3 79 73.4
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 3.5e-20 101.3 70 75.7
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 6.0e-20 100.5 67 76.1
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 3.9e-19 97.8 81 65.4
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 7.3e-18 93.6 111 53.2
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.8e-17 91.7 75 64.0
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 4.8e-17 90.9 71 64.8
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 4.8e-17 90.9 71 69.0
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 4.8e-17 90.9 75 66.7
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.4e-16 89.4 53 83.0
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.4e-16 89.4 71 63.4
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 4.0e-16 87.8 53 81.1
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 5.3e-16 87.4 71 64.8
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.5e-15 85.9 73 65.8
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.8e-14 81.3 69 66.7
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.4e-13 78.6 69 65.2
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.4e-13 78.6 71 62.0
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 2.1e-12 75.5 54 70.4
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 4.6e-12 74.3 53 71.7
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 4.6e-12 74.3 53 71.7
FAN03G3288 Fragaria x ananassa HOM05D004221 ORTHO05D205401 1.6e-09 65.9 38 92.1
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 5.3e-08 60.8 79 45.6
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 5.8e-07 57.4 52 57.7


User provided reference genes

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